Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0586
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    30   0.021
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.77 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.77 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 77  VGRLALVTGAGSGIGRAACQVLSKEGATVI 166
           +  +ALVTGA SGIG+   + L  +G  VI
Sbjct: 6   IDEVALVTGANSGIGKCLIECLVGKGMKVI 35


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 250 AYAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNL 429
           A  V   V+ +   + L  D L  Y K    +VN++ + R    LKLS+     +++VNL
Sbjct: 16  ALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQ-----LIDVNL 70

Query: 430 KGTFL 444
           K   +
Sbjct: 71  KNQIM 75


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 250 AYAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNL 429
           A  V   V+ +   + L  D L  Y K    +VN++ + R    LKLS+     +++VNL
Sbjct: 16  ALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQ-----LIDVNL 70

Query: 430 KGTFL 444
           K   +
Sbjct: 71  KNQIM 75


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 286 LYCWKRLIPQHML 248
           +Y WK LIP H++
Sbjct: 630 VYEWKELIPSHIM 642


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 183 YFLSAAITVAPSFDKTWHAARPIPEPAPVTRARR 82
           Y+L   + ++   DK    A+   +P+PVT A +
Sbjct: 338 YWLPCILRMSRPSDKEEREAQKSQKPSPVTGASK 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,315
Number of Sequences: 438
Number of extensions: 4095
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)