Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0585
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    33   0.001
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.65 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    25   0.65 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    25   0.65 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.86 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.86 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 90  GLDPAGPLWNTNSNRLRP-GDGVYV--EAIHTDGSTSGLGI 203
           G  P G LWN N+ RL P GD  Y   E I  +G  SGL I
Sbjct: 822 GEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSI 862


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 483 RLKNQRTIKK*IIPPQRITQLFSSPNNFN*TQLDNKKNE 599
           R+K ++ +K+ +IPP+ I+   S+ N+ + +  +  +NE
Sbjct: 305 RMKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNE 343


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 483 RLKNQRTIKK*IIPPQRITQLFSSPNNFN*TQLDNKKNE 599
           R+K ++ +K+ +IPP+ I+   S+ N+ + +  +  +NE
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNE 132


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 483 RLKNQRTIKK*IIPPQRITQLFSSPNNFN*TQLDNKKNE 599
           R+K ++ +K+ +IPP+ I+   S+ N+ + +  +  +NE
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNE 132


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 539  SDSLWRNNSFFDGPLI 492
            SD +  N+ F+DGPLI
Sbjct: 1166 SDEVMENSWFYDGPLI 1181


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 539  SDSLWRNNSFFDGPLI 492
            SD +  N+ F+DGPLI
Sbjct: 1166 SDEVMENSWFYDGPLI 1181


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/80 (17%), Positives = 28/80 (35%)
 Frame = +2

Query: 200  DWICYCSY*FLPQWRQLTAGCSTSLCNHNRAWELFAATVTYNHLVGTQCNNMAQVTANTC 379
            DWI    Y +  QW ++T   +    +   A   F    T ++ +    +    V     
Sbjct: 2008 DWIAVMCYDYHGQWDKITGHVAPMYAHPEDADATFNTNFTIHYWIEKGADRRKLVMGMPM 2067

Query: 380  RGGRLNMGNDNLRKTGSGIY 439
             G   ++ ++N     +  Y
Sbjct: 2068 YGQSFSLADNNQNGLNAATY 2087


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 242 AIGEEISTSNSRSNPKTTGA 183
           +I    STS+S S+P  T A
Sbjct: 160 SINNNTSTSSSASSPSVTAA 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,004
Number of Sequences: 336
Number of extensions: 3435
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)