Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0585
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   3.7  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   4.9  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 420 KLDPAYTDLTLLEDTHTKIIDRLKNQRTI 506
           KLD    +  LLED  T+II   K  RTI
Sbjct: 569 KLDAGTDEQILLEDEFTRIIMSFKEVRTI 597


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = -2

Query: 241 PLGKKSVRAIADPIPRPLVLPSV*IAST*TPSPGLRRFELVFHRGPAGSNPVMRATLPPN 62
           PL   SV A+ D  P P   PS+        S  +   E+  H     + P   AT  P 
Sbjct: 443 PLPSASVPALGDGSPDPPAAPSI------QNSLSVHESEMPPHVTRDYTQPAASATPVPK 496

Query: 61  SRPAFPTT*APKLKPAK 11
            +P+  +   PK K +K
Sbjct: 497 EKPSEKSEKPPKKKGSK 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,330
Number of Sequences: 5004
Number of extensions: 53789
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)