Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0585
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0499 - 3581145-3582425 30 1.2
08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394 29 3.7
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 3.7
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 28 5.0
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 28 5.0
12_01_0272 + 1985348-1986036,1986142-1988020 28 6.5
11_01_0271 + 2039100-2041760 28 6.5
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 28 6.5
10_02_0181 + 6348677-6348946,6348963-6349176,6351048-6351413,635... 27 8.7
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 27 8.7
06_02_0011 - 10569471-10572245 27 8.7
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 27 8.7
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 8.7
>06_01_0499 - 3581145-3582425
Length = 426
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = -2
Query: 262 AAGCELPPLGKKSVRAIAD-PIP------RPLVLPSV*IAST*TPSPGLRRFEL 122
+ GCE+ LG + R +AD P P P +L ++ +T P+PG+ RF++
Sbjct: 221 SVGCEVFSLGSPAWRPVADSPCPVRAGAASPCILGAIYWITTAAPTPGMLRFDV 274
>08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394
Length = 156
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 243 GNSQPAAPLACVTTIELGNYLLLRLHTTTWS 335
GN++P P A +++ YLLL L W+
Sbjct: 116 GNARPPTPAAAAALLQILAYLLLLLRLAAWT 146
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 9 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 116
+L GFS+G ++ + + + R+A + L P G W
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYW 169
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 151 PSPGLRRFELVFHRGPAGSNPVMRATLPPNSRPAFPTT*APK 26
PSP L R V GP+ S A + RP+F T AP+
Sbjct: 504 PSPPLPRRSSVDRSGPSSSRRGYEAAHTSHDRPSFQLTPAPE 545
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 9 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 116
+L GFS+G ++ + + + R+A + L P G W
Sbjct: 167 YLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 63 LGGRVARITGLDPAGPLWNTNSNRLRPGDGV 155
L V GLDP G W N L GD V
Sbjct: 42 LAATVTYTAGLDPPGGFWTDNVGELLAGDPV 72
>11_01_0271 + 2039100-2041760
Length = 886
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 63 LGGRVARITGLDPAGPLWNTNSNRLRPGDGV 155
L V GLDP G W N L GD V
Sbjct: 43 LAATVTYTAGLDPPGGFWTDNVGELLAGDPV 73
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 313 GYIQPLGRHSMQQYGTSY 366
GYIQP GR M++ G +Y
Sbjct: 453 GYIQPQGRRRMEEIGNNY 470
>10_02_0181 +
6348677-6348946,6348963-6349176,6351048-6351413,
6351607-6351728,6351767-6352093
Length = 432
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 187 VLPSV*IAST*TPSPGLRRFELVFHRGPAGSNPVMRATLPPNSRP 53
V+P+ + P+ G RR ++ + P G+N ++ T P RP
Sbjct: 289 VVPAAHTDAADAPTQGQRRVKIAGYDVPKGANVIVNPTAPLEYRP 333
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 459 LLAVLSRYMPDPVFLKLSLPMLRRPPRQVLAV 364
LLAVLS YM D +L + P LR+ R VL +
Sbjct: 289 LLAVLSNYMVDMEWLLTACPSLRK-VRHVLVI 319
>06_02_0011 - 10569471-10572245
Length = 924
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 87 TGLDPAGPLWNTNSNRLRPGDGVYVEAIHTDG 182
+GL+P G W+ N R GD + E H+ G
Sbjct: 435 SGLNPPGGFWSGNEFRHADGDHILEEYHHSAG 466
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 247 LPPLGKKSVRAIADPIPRPLVLP 179
LPP+G ++ A ADP RP +P
Sbjct: 428 LPPVGTRTWHAPADPFRRPYEMP 450
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 151 PSPGLRRFELVFHRGPAGSNPVMRATLPPNSRPAFP-TT*APK 26
PSP RR + R A ++PV R PP RP P TT PK
Sbjct: 1040 PSPR-RRPDSPPIRRRADASPVRRGDTPPRRRPGSPVTTTTPK 1081
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,309
Number of Sequences: 37544
Number of extensions: 408242
Number of successful extensions: 1108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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