Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0585
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.11 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 90  GLDPAGPLWNTNSNRLRP-GDGVYV--EAIHTDGSTSGLGI 203
           G  P G LWN N+ RL P  D  Y   E I  +G  S L I
Sbjct: 802 GEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSDLSI 842



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 294  GNYLLLRLHTTTWSALNATIWHKLRLTLAVEDALTWAMTI*GKLDPA 434
            GN+++L L   TW  L  T  +     +A  +  T  +T  G + PA
Sbjct: 1517 GNFVVLDLVPATWYHLRVTAHNNAGFAVAEYEFATLTVT-GGTIAPA 1562


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 316 YIQPLGRHSMQQYGTSYG 369
           Y  P+GR   + YG S G
Sbjct: 421 YFMPIGRPRAKDYGHSSG 438


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 493 IRGPSKNELFRHKESLNYSHLQIISTEL 576
           ++GP+  ++FR   +  +S L  IS E+
Sbjct: 412 LKGPANPDIFRVSCATEHSQLTNISEEV 439


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 493 IRGPSKNELFRHKESLNYSHLQIISTEL 576
           ++GP+  ++FR   +  +S L  IS E+
Sbjct: 118 LKGPANPDIFRVSCATEHSQLTNISEEV 145


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
          receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 12 LAGFSLGAHVVGNAGRE 62
          L G ++G H++   GR+
Sbjct: 12 LPGITIGVHILDTCGRD 28


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 12  LAGFSLGAHVVGNAGRE 62
           L G ++G H++   GR+
Sbjct: 102 LPGITIGVHILDTCGRD 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,137
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)