Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0585
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 31 0.44
At1g58030.1 68414.m06577 amino acid permease family protein simi... 31 0.78
At5g36940.1 68418.m04430 amino acid permease family protein simi... 30 1.0
At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein ... 30 1.4
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 29 3.1
At3g59530.2 68416.m06644 strictosidine synthase family protein s... 28 5.5
At3g59530.1 68416.m06643 strictosidine synthase family protein s... 28 5.5
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 27 7.2
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 9.6
At3g03720.1 68416.m00377 amino acid permease family protein simi... 27 9.6
At1g23690.1 68414.m02991 expressed protein contains Pfam profile... 27 9.6
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 260 CSTSLCNHNRAWELFAATVTYNHLVGTQCNNMAQVTANTC 379
CS S+C+ ++ WE F + + N M Q+ N C
Sbjct: 241 CSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDC 280
>At1g58030.1 68414.m06577 amino acid permease family protein similar
to SP|P18581 Low-affinity cationic amino acid
transporter-2 (CAT-2) (T-cell early activation protein)
{Mus musculus}; contains Pfam profile PF00324: Amino
acid permease
Length = 635
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 216 ARTDFFPNGGNSQPAAPLACVTTIELGNYLLLRLHTTTWSALNATIW 356
AR F +GG P PL + I + YLL+ L + TW+ ++W
Sbjct: 550 ARHTFGHSGGYMCPFVPLLPIICILINMYLLVNLGSATWA--RVSVW 594
>At5g36940.1 68418.m04430 amino acid permease family protein similar
to SP|Q09143 High-affinity cationic amino acid
transporter-1 (CAT-1) {Mus musculus}; contains Pfam
profile PF00324: Amino acid permease
Length = 609
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 216 ARTDFFPNGGNSQPAAPLACVTTIELGNYLLLRLHTTTWSALNATIW 356
AR F +GG P PL + I + YLL+ L TW + ++W
Sbjct: 524 ARHSFGHSGGFICPFVPLLPIVCILINMYLLVNLGAATW--VRVSVW 568
>At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein 3,
putative / PSRP-3, putative similar to SP|P82412
Plastid-specific 30S ribosomal protein 3, chloroplast
precursor (PSRP-3) {Spinacia oleracea}; contains Pfam
profile PF04839: Plastid and cyanobacterial ribosomal
protein (PSRP-3 / Ycf65)
Length = 183
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 250 ELPPLGKKSVRAIADPIPRPLVL 182
E PPLGKK +R + P+ +P V+
Sbjct: 83 ESPPLGKKKMRVLVKPLEKPKVV 105
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 189 SGLGIGSAIARTDFFPNGGNSQPAAPLACVTTIELGNYLLLRLHTT 326
+GL + IA TDF P +QP P+ + Y L H +
Sbjct: 41 AGLHCETCIANTDFRPRCSRTQPINPITKAKGLPFNKYSWLTTHNS 86
>At3g59530.2 68416.m06644 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +2
Query: 236 QWR-QLTAGCSTSLCNHNRAWELFAATVTYNHLVGTQCNNMAQVTANTCRGGRLNMGND- 409
QW+ + G L H L+ A Y LV +A A G + ND
Sbjct: 142 QWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDL 201
Query: 410 NLRKTGSGIYRLNTARRYPY*NH 478
++ + GS I+ +T++RY NH
Sbjct: 202 DIHRNGS-IFFTDTSKRYDRANH 223
>At3g59530.1 68416.m06643 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +2
Query: 236 QWR-QLTAGCSTSLCNHNRAWELFAATVTYNHLVGTQCNNMAQVTANTCRGGRLNMGND- 409
QW+ + G L H L+ A Y LV +A A G + ND
Sbjct: 142 QWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDL 201
Query: 410 NLRKTGSGIYRLNTARRYPY*NH 478
++ + GS I+ +T++RY NH
Sbjct: 202 DIHRNGS-IFFTDTSKRYDRANH 223
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +3
Query: 18 GFSLGAHVVGNAGRELGGRVARITGLDPAGPLWNTNSNRLRPGDG 152
GF G G G GGR R G P GP + RPG G
Sbjct: 39 GFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGG 83
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 54 GRELGGRVARITGLDPAGPLWNTNSNRLRPGDG 152
G+ +GGR R+ + G N RL+P G
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHGG 101
>At3g03720.1 68416.m00377 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 600
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 159 VEAIHTDGSTSGLG-IGSAIARTDFFPNGGNSQPAAPLACVTTIELGNYLLLRLHTTTWS 335
V A+ GS LG I R +F GG P P V I + YL++ + TW
Sbjct: 498 VSAVILLGSLITLGYIDEDEERHNFGHKGGFLCPFVPYLPVLCILINTYLIINIGAGTW- 556
Query: 336 ALNATIW 356
+ IW
Sbjct: 557 -IRVLIW 562
>At1g23690.1 68414.m02991 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 273
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 519 IPPQRITQLFSSPNNFN*TQLDNK 590
+PP+ + LF++PN+F ++DN+
Sbjct: 94 LPPEGVYDLFANPNDFPFFRIDNE 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,190
Number of Sequences: 28952
Number of extensions: 304652
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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