Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0584
(740 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 182 6e-45
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 106 5e-22
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 91 2e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 85 2e-15
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 80 5e-14
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 80 6e-14
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 74 4e-12
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 73 6e-12
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 73 1e-11
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 71 3e-11
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 71 4e-11
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 70 7e-11
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 69 1e-10
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 67 5e-10
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 66 9e-10
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 64 3e-09
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 63 6e-09
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 60 7e-08
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 57 5e-07
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 56 7e-07
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 56 9e-07
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 54 3e-06
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 47 6e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 44 0.003
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 42 0.021
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.064
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.064
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.085
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 37 0.45
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 36 1.4
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 1.4
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 34 3.2
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 4.2
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.6
UniRef50_A6SQ32 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_A6QSD0 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 5.6
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 182 bits (444), Expect = 6e-45
Identities = 86/87 (98%), Positives = 86/87 (98%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 142
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQ 508
VGILPSGLLLVTGPFAFNSCPLRRIPQ
Sbjct: 143 VGILPSGLLLVTGPFAFNSCPLRRIPQ 169
Score = 128 bits (308), Expect = 2e-28
Identities = 64/90 (71%), Positives = 64/90 (71%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F P YVIGTSTRISLGNFKLPKHFNDDYF EGDDIFA
Sbjct: 157 FAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFA 216
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGAR 738
TKKEKYVPSEQRKTDQKTVDEAVIKAIGAR
Sbjct: 217 TKKEKYVPSEQRKTDQKTVDEAVIKAIGAR 246
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/49 (71%), Positives = 35/49 (71%)
Frame = +3
Query: 120 RFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTEQYP 266
RFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT P
Sbjct: 40 RFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVP 88
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 106 bits (255), Expect = 5e-22
Identities = 53/87 (60%), Positives = 62/87 (71%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G RTV LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQ 508
+ +L SGLLLVTGPFA NSCPLRR+ Q
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRVSQ 161
Score = 79.4 bits (187), Expect = 9e-14
Identities = 41/89 (46%), Positives = 52/89 (58%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F + P S YVIGTS+++ LG FK+P+H ND YF DIFA
Sbjct: 149 FALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---DIFA 205
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
KKE++VP+EQRK DQK VD A++K I A
Sbjct: 206 AKKERFVPNEQRKKDQKEVDAALLKVIKA 234
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 91.5 bits (217), Expect = 2e-17
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 421
G R V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRV
Sbjct: 103 GTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 422 VLVGILPSGLLLVTGPFAFNSCPLRRIPQ 508
V + L SGLLLVTGP N PLRR Q
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRTHQ 191
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/84 (42%), Positives = 45/84 (53%)
Frame = +1
Query: 484 VPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 663
VP +VI TST+I + N K+PKH D YF EG+ IF T+KEK
Sbjct: 184 VPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQ---EGE-IFDTEKEK 239
Query: 664 YVPSEQRKTDQKTVDEAVIKAIGA 735
Y +EQRK DQK VD ++ I A
Sbjct: 240 YEITEQRKIDQKAVDSQILPKIKA 263
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 RSESRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 254
R R+S+S M+ +KA KY L V K +GG+KNGGT
Sbjct: 52 RGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT 104
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 84.6 bits (200), Expect = 2e-15
Identities = 44/88 (50%), Positives = 57/88 (64%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G R VP++R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 63 GKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQA 511
+ L SGLLLVTGPF N PLRRIPQ+
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRRIPQS 148
Score = 50.4 bits (115), Expect = 5e-05
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIF 645
F I VP YVI TST I + + KLP+H F D+ + +D+F
Sbjct: 135 FKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMF 189
Query: 646 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
E+ PSEQR DQK VD+ ++ I A
Sbjct: 190 EEAAEEKKPSEQRIADQKAVDDQILPKISA 219
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 80.2 bits (189), Expect = 5e-14
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 421
G R +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRV
Sbjct: 79 GKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRV 138
Query: 422 VLVGILPSGLLLVTGPFAFNSCPLRRIPQ 508
V + L +GLL VTGP+ N CPLRRI Q
Sbjct: 139 VFLKQLKTGLLPVTGPYGVNGCPLRRINQ 167
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +1
Query: 511 YVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKT 690
YVI TST++ L KLP+ +D YF EG +IF K +++V SE+ K
Sbjct: 169 YVIATSTKLDLSKVKLPEGLDDRYF--KRNKGPKRGRKDEG-EIFEAKPQEHVVSEEHKK 225
Query: 691 DQKTVDEAVIKAIGA 735
Q VD+ V++A+ A
Sbjct: 226 TQAEVDKQVLEAVKA 240
Score = 38.3 bits (85), Expect = 0.20
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 123 FSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTEQYP 266
FS+SKMFHK+ +K V VK++ GEKNGG P
Sbjct: 37 FSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 79.8 bits (188), Expect = 6e-14
Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +2
Query: 263 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 433
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 434 ILPSGLLLVTGPFAFNSCPLRRIPQ 508
L SGLLLVTGPF +N PLRR+ Q
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQ 138
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 484 VPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 663
VP + YVI TSTRI + F +PKH +D+YF + +F+T+ +K
Sbjct: 131 VPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF----RRVDLKESKTDAGKLFSTETKK 186
Query: 664 YVPSEQRKTDQKTVDEAVIKAI 729
Y S+ RK DQK VD + AI
Sbjct: 187 YTVSDIRKEDQKLVDNQIRAAI 208
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 73.7 bits (173), Expect = 4e-12
Identities = 41/81 (50%), Positives = 53/81 (65%)
Frame = +2
Query: 260 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 439
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 440 PSGLLLVTGPFAFNSCPLRRI 502
SGLLLVTGPF+FN PLRR+
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRV 89
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 73.3 bits (172), Expect = 6e-12
Identities = 36/59 (61%), Positives = 42/59 (71%)
Frame = +2
Query: 332 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 508
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ Q
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQ 144
Score = 53.6 bits (123), Expect = 5e-06
Identities = 31/81 (38%), Positives = 41/81 (50%)
Frame = +1
Query: 484 VPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 663
VP + YVI T TRI + N K+P ND++F D IFA +++K
Sbjct: 137 VPLRRVNQRYVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFAEEEKK 191
Query: 664 YVPSEQRKTDQKTVDEAVIKA 726
Y S+ RK QK VD A+I A
Sbjct: 192 YTVSDDRKKLQKQVDTALIAA 212
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 72.5 bits (170), Expect = 1e-11
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 248 GNRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 421
G R +P +K+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV
Sbjct: 19 GERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRV 76
Query: 422 VLVGILPSGLLLVTGPFAFNSCPLRRI 502
+L+ L G+LLVTGPF N PLRR+
Sbjct: 77 ILLKHLGQGVLLVTGPFKLNGVPLRRV 103
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +2
Query: 263 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 442
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 443 SGLLLVTGPFAFNSCPLRRIPQA 511
SGLLLVTGPF N PLRR+ QA
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137
Score = 52.0 bits (119), Expect = 1e-05
Identities = 35/89 (39%), Positives = 45/89 (50%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + YVIGTST++ + L K F+D YF EG+ A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEA 179
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
K+EK + +K DQK VD A+IKAI A
Sbjct: 180 EKEEKKEIPQGKKDDQKAVDAALIKAIEA 208
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 70.5 bits (165), Expect = 4e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G R V ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQAM 514
+ L SGLLLV+GP N PLRR+ Q +
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRVHQKL 144
Score = 68.1 bits (159), Expect = 2e-10
Identities = 39/85 (45%), Positives = 48/85 (56%)
Frame = +1
Query: 484 VPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 663
VP VI TSTRI + N K+P+H ND YF EGD IFA+K E+
Sbjct: 135 VPLRRVHQKLVIATSTRIDISNVKVPEHINDTYFRRHKVKKEAK----EGD-IFASKPER 189
Query: 664 YVPSEQRKTDQKTVDEAVIKAIGAR 738
Y P+EQRK DQ VD ++KAI A+
Sbjct: 190 YTPTEQRKKDQAEVDVQLLKAIKAQ 214
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 69.7 bits (163), Expect = 7e-11
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G R VP K+ +YP +K + K + +RP++K GT+ ILLAG G RVV+
Sbjct: 34 GYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV 92
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQ 508
+ L SG LLVTGP+A N PL R+ Q
Sbjct: 93 LKQLDSGQLLVTGPYAVNRIPLTRVDQ 119
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 68.9 bits (161), Expect = 1e-10
Identities = 34/68 (50%), Positives = 46/68 (67%)
Frame = +2
Query: 308 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 487
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 488 PLRRIPQA 511
P+RR+ A
Sbjct: 80 PVRRVNPA 87
Score = 35.1 bits (77), Expect = 1.8
Identities = 24/87 (27%), Positives = 40/87 (45%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
+ + VP + Y+I TST++ + + K F D+YF D
Sbjct: 74 YALNGVPVRRVNPAYIIATSTKVDVSKADVSK-FTDEYFKVDRSKLKKSKDAFM-DQGEE 131
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAI 729
TK + V SE+RK Q+ +D ++I +I
Sbjct: 132 TKVNRVV-SEERKKTQQALDASIIPSI 157
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 66.9 bits (156), Expect = 5e-10
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +2
Query: 284 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 460
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 461 TGPFAFNSCPLRRIPQ 508
TGPF N P+RR+ Q
Sbjct: 110 TGPFKINGVPIRRVNQ 125
Score = 44.4 bits (100), Expect = 0.003
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + YVI TST++ + + K F+D YF EG+ +F
Sbjct: 113 FKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFE 167
Query: 649 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGA 735
T+KE K +P E +K DQK VD +IKAI A
Sbjct: 168 TEKEATKNLP-EFKKEDQKVVDAELIKAIEA 197
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 66.1 bits (154), Expect = 9e-10
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQ 508
+ L SGL+L+TGPF N PLRRI Q
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQ 138
Score = 41.1 bits (92), Expect = 0.028
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F + VP YVI TST+I + + K+ ND YF D+
Sbjct: 126 FKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDE--- 182
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAI 729
K EK ++ R DQK+VD A++ +
Sbjct: 183 KKAEKKKIADSRVADQKSVDSAILAVL 209
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/54 (64%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 353 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQA 511
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI QA
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQA 120
Score = 56.8 bits (131), Expect = 5e-07
Identities = 30/81 (37%), Positives = 43/81 (53%)
Frame = +1
Query: 487 PATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 666
P +VI TS ++++ K+P+H ND+YF G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEY 166
Query: 667 VPSEQRKTDQKTVDEAVIKAI 729
SEQRK D KTVD ++ AI
Sbjct: 167 TVSEQRKKDIKTVDAPILAAI 187
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 326 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 499
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 500 I 502
+
Sbjct: 84 V 84
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 59.7 bits (138), Expect = 7e-08
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +2
Query: 347 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 502
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRV 119
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 56.8 bits (131), Expect = 5e-07
Identities = 34/69 (49%), Positives = 42/69 (60%)
Frame = +2
Query: 305 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 484
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 485 CPLRRIPQA 511
PL+R+ A
Sbjct: 98 VPLKRVNSA 106
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 56.4 bits (130), Expect = 7e-07
Identities = 37/85 (43%), Positives = 43/85 (50%)
Frame = +2
Query: 377 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQAM*SAPPPEFHSATSN 556
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q S F
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQ---SVVISTFTKVDIC 69
Query: 557 CQNTSMMITSRRIRSASNVQSNAKR 631
TS +T + S Q+ A R
Sbjct: 70 KVKTSKHLTDASFKKQSAAQAQAPR 94
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 56.0 bits (129), Expect = 9e-07
Identities = 31/78 (39%), Positives = 48/78 (61%)
Frame = +2
Query: 269 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 448
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 449 LLLVTGPFAFNSCPLRRI 502
LL++GPF N PLRR+
Sbjct: 62 TLLISGPFKVNGVPLRRV 79
Score = 36.7 bits (81), Expect = 0.60
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F + VP + YVI TST++S+ + K FN +YF + ++F
Sbjct: 69 FKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF----AKEKLTKKEKKEANLFP 123
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAI 729
++ K + +E R DQK VD+A+I I
Sbjct: 124 EQQNKEIKAE-RVEDQKVVDKALIAEI 149
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/87 (35%), Positives = 44/87 (50%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + +V+ TST+I + K+P DDYF E DIF
Sbjct: 17 FSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKRTKYFGK------EKKDIFE 70
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAI 729
K++Y ++ RK DQKT+D AV+ +I
Sbjct: 71 QGKQEYTLTDARKADQKTIDTAVLGSI 97
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 353 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRI 502
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRI 79
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 356 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 469
RP+LK+GTV I++ G H GKR V+V +G++ + GP
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP 90
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 41.5 bits (93), Expect = 0.021
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +2
Query: 413 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQA 511
KRVV + L SGLLL+TG F N PLRR+ QA
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQA 188
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.064
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 356 RPNLKIGTVCILLAGRHAGKRVVLVGILP 442
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.064
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 359 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 502
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRM 48
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.085
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 359 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 502
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.11
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 284 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 463
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 464 GPFAFNSCP 490
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 37.1 bits (82), Expect = 0.45
Identities = 29/87 (33%), Positives = 43/87 (49%)
Frame = +2
Query: 248 GNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 427
G V L++ K + + + + S P KH + + N TV I++ G+H +RVV
Sbjct: 100 GTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVF 152
Query: 428 VGILPSGLLLVTGPFAFNSCPLRRIPQ 508
+ L G LL+TGP A N L R Q
Sbjct: 153 LKQLSRGFLLITGPLALNLVLLYRTHQ 179
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 35.5 bits (78), Expect = 1.4
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +2
Query: 299 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 478
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 479 NSCPLRRIPQ 508
N PL RI +
Sbjct: 65 NGIPLFRIDE 74
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 251 NRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 370
NR LK SF P + + ASS GRP K +R+R LK
Sbjct: 132 NREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 365 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 502
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 34.3 bits (75), Expect = 3.2
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 249 GTEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 356
G ++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 237 GFQKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 323 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 481
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 438 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 304
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A6SQ32 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 681
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 233 R*EEWGNRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 370
R EE+ NR +K SF P + ASS GRP + +R+R LK
Sbjct: 126 RKEEF-NREEEIKAMVSFMPNRPAADASSSGRPMKRDSKRMRTGLK 170
>UniRef50_A6QSD0 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 906
Score = 33.5 bits (73), Expect = 5.6
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Frame = +2
Query: 293 TQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPF 472
+Q A S + + R I+ L + + +L+ RH R VL+ P P
Sbjct: 179 SQTSTPAGSSMKSAQQSQREIKHPLPVNSAAAVLSSRHNHGRAVLLR-RPKAESDHVEPL 237
Query: 473 AFNSCPLRRI--PQAM*SAPPPEFHSATSN-CQNTSMMITSRRIRSASNVQSNAKRVMTS 643
+ C R P + ++ P ++ +N C N++ ++ +R++ N S AK +
Sbjct: 238 PGSPCLNRTTARPLHLRASHPAISNNDVNNMCSNSTSVVQGYSLRNSWNHNSFAKSQFEA 297
Query: 644 LPQ-KKRNTFHLSSAKP 691
LP +R+T++ +S +P
Sbjct: 298 LPLCPQRDTYYANSEEP 314
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,252,449
Number of Sequences: 1657284
Number of extensions: 14581678
Number of successful extensions: 39997
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39948
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -