Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0584
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    55   9e-09
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.17 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.9  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 27/51 (52%), Positives = 36/51 (70%)
 Frame = +2

Query: 350 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 502
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRV 96


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 432 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 298
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 560 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 697
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 436  SAQRSAFSYWTFCIQFVPATPYSTGY 513
            S + SAF+Y T   Q+ P+T  +T Y
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSY 1463


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 24  RRPSLLPHLQV--RD*EKIYEKTQEL*SGQRSESRFSKSKMFHKKAKYKFI 170
           RR SLLP  ++  R    +YE++  L    RSES FSK   F  K    F+
Sbjct: 150 RRKSLLPKPKMFQRVASALYEESSPLELEIRSESEFSK-MFFEPKKSSSFV 199


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +3

Query: 261 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 347
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,566
Number of Sequences: 5004
Number of extensions: 59541
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)