Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0584
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    68   9e-12
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    65   5e-11
02_02_0470 - 10700092-10700505                                         30   2.2  
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310...    29   3.9  
10_08_0951 - 21769342-21769752                                         29   5.1  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = +2

Query: 284 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 460
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 461 TGPFAFNSCPLRRIPQA 511
           TGPF  N  P+RR+ QA
Sbjct: 107 TGPFKINGVPIRRVNQA 123



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = +1

Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
           F I  VP    +  YVI TST++ +   K+ K F+D YF              EG ++F 
Sbjct: 110 FKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG-ELFE 164

Query: 649 TKKE--KYVPSEQRKTDQKTVDEAVIKAI 729
           T+KE  K +P + +K DQK VD  +IKAI
Sbjct: 165 TEKEATKNLP-DFKKDDQKAVDAELIKAI 192


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
 Frame = +2

Query: 290 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 463
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 464 GPFAFNSCPLRRIPQ 508
           GPF  N  P+RR+ Q
Sbjct: 131 GPFKINGVPIRRVNQ 145



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +1

Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
           F I  VP    +  YVI TST++ +    + K F+D YF              EG+ +F 
Sbjct: 133 FKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFE 187

Query: 649 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGA 735
           T+KE  K +P E +K DQK VD  +IKAI A
Sbjct: 188 TEKEATKNLP-EFKKEDQKVVDAELIKAIEA 217


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 365 LKIGTVCILLAGRHAGKRVVLVGILPSG 448
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>05_07_0258 -
           28729620-28729782,28730193-28730339,28730808-28731032,
           28731148-28731178,28731424-28731940
          Length = 360

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 430 NKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPTFEGYCSV 251
           N Y     + TS + A ++ L   +DP+    ++ +T  G   L +     P F GY + 
Sbjct: 147 NSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTSTPTNPAFGGYDNS 205

Query: 250 PPFF---SPPI 227
           PP F   SPP+
Sbjct: 206 PPGFGNNSPPL 216


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 365 LKIGTVCILLAGRHAGKRVVLVGILPSG 448
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,864
Number of Sequences: 37544
Number of extensions: 438154
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)