Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0584
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   1e-06
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   4.0  
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                29   5.2  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +1

Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIF 645
           F I  VP       YVI TST I + + KLP+H F D+ +                +D+F
Sbjct: 3   FKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMF 57

Query: 646 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
               E+  PSEQR  DQK VD+ ++  I A
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISA 87


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 358 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCIQFVPATPYSTG 510
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S G
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFSGG 135


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 461 TGPFAFNSCPLRRIPQAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 640
           T   A N+C  RR  + +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 641 SLPQKKRNT 667
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 461 TGPFAFNSCPLRRIPQAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 640
           T   A N+C  RR  + +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 641 SLPQKKRNT 667
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 479 NSCPLRRIPQAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 658
           N+C  RR  + +  A       AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 659 RNT 667
           R T
Sbjct: 134 RTT 136


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 280 LPTFEGYCSVPPFFSPP 230
           +PT +GY  VP FFSPP
Sbjct: 528 MPTAQGYGLVPNFFSPP 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,687,129
Number of Sequences: 59808
Number of extensions: 475230
Number of successful extensions: 1290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)