Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0584
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    64   1e-10
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/54 (64%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQA 511
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI QA
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQA 120



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 30/81 (37%), Positives = 43/81 (53%)
 Frame = +1

Query: 487 PATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 666
           P       +VI TS ++++   K+P+H ND+YF               G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEY 166

Query: 667 VPSEQRKTDQKTVDEAVIKAI 729
             SEQRK D KTVD  ++ AI
Sbjct: 167 TVSEQRKKDIKTVDAPILAAI 187


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 284 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 418
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 596 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMKL*SKP 727
           RSA +V+    +V+  + +  R + HLS+++PI  +S    S P
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPP 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,664
Number of Sequences: 27780
Number of extensions: 350765
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)