Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0584
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 71 8e-13
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 71 8e-13
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 68 6e-12
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.9
At2g27270.1 68415.m03277 expressed protein 29 2.4
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 28 5.7
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 28 7.5
At5g19360.1 68418.m02307 calcium-dependent protein kinase, putat... 28 7.5
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 27 9.9
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 70.9 bits (166), Expect = 8e-13
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +2
Query: 263 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 442
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 443 SGLLLVTGPFAFNSCPLRRIPQA 511
SGLLLVTGPF N PLRR+ QA
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/89 (39%), Positives = 45/89 (50%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + YVIGTST++ + L K F+D YF EG+ A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEA 179
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
K+EK + +K DQK VD A+IKAI A
Sbjct: 180 EKEEKKEIPQGKKDDQKAVDAALIKAIEA 208
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 70.9 bits (166), Expect = 8e-13
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +2
Query: 263 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 442
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 443 SGLLLVTGPFAFNSCPLRRIPQA 511
SGLLLVTGPF N PLRR+ QA
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/89 (39%), Positives = 45/89 (50%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + YVIGTST++ + L K F+D YF EG+ A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEA 179
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
K+EK + +K DQK VD A+IKAI A
Sbjct: 180 EKEEKKEIPQVKKDDQKAVDAALIKAIEA 208
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +2
Query: 263 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 442
P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114
Query: 443 SGLLLVTGPFAFNSCPLRRIPQA 511
SGLLLVTGPF N PLRR+ QA
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/89 (39%), Positives = 46/89 (51%)
Frame = +1
Query: 469 FCIQFVPATPYSTGYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 648
F I VP + YVIGTST+I + K F+D YF EG+ A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGKVAEKKKKKT---EGEFFEA 179
Query: 649 TKKEKYVPSEQRKTDQKTVDEAVIKAIGA 735
K+EK +++K DQKTVD A+IK+I A
Sbjct: 180 EKEEKKEIPQEKKEDQKTVDAALIKSIEA 208
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 263 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 352
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 290 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 469
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 470 FAFNSCPLR-RIPQAM 514
FAFN ++ R+P+ M
Sbjct: 74 FAFNYIAIQPRVPRFM 89
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 493 TPYSTGYVIGTSTRISLGNFKLPK 564
+PY + GT TR SLG F +PK
Sbjct: 244 SPYHRVMMTGTETRYSLGLFSIPK 267
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -2
Query: 439 QNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTA-TR*GTDFLLSG--VEGLPTF 269
+NS+ +P + ++ N N Y+Q G M A W + GT + G ++G+P +
Sbjct: 334 ENSDAKSP----TDNKRNGNQEYVQ-GQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYY 388
Query: 268 EGYCSVPPFFSP 233
GY P+ SP
Sbjct: 389 PGYPGASPYPSP 400
>At5g19360.1 68418.m02307 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748
Length = 523
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 537 NSGGGADHIACGIRRSGHELNAKGPVTKSRPLGRI 433
N GGG +R S H + P TK P+G +
Sbjct: 22 NGGGGVGAAEASVRASKHPPASPPPATKQGPIGPV 56
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 518 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 697
S PP +S Q + + T + AS ++K MTS Q ++N F + S +
Sbjct: 1082 SWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTRMTSAQQHEQNIFRMFSVGAVS 1141
Query: 698 RQS 706
+S
Sbjct: 1142 NES 1144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,137
Number of Sequences: 28952
Number of extensions: 329425
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -