Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0583
(648 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 136 4e-31
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 136 4e-31
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 128 1e-28
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 120 3e-26
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 108 1e-22
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 106 4e-22
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 93 7e-18
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 92 1e-17
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 91 2e-17
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 87 5e-16
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 74 3e-12
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 70 6e-11
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 64 3e-09
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 63 6e-09
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 61 3e-08
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 57 3e-07
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 56 1e-06
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 55 1e-06
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 55 1e-06
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 51 2e-05
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 48 3e-04
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 45 0.001
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 43 0.006
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 42 0.017
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 40 0.069
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 39 0.091
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 38 0.16
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 38 0.16
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.48
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 37 0.48
UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;... 36 0.84
UniRef50_Q2IEW0 Cluster: Trigger factor; n=3; Cystobacterineae|R... 33 4.5
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 33 6.0
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 6.0
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 33 6.0
UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina ... 33 6.0
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 7.9
UniRef50_Q38X90 Cluster: Hypothetical lipoprotein; n=1; Lactobac... 33 7.9
UniRef50_A0L8H8 Cluster: DNA repair protein RecN; n=2; cellular ... 33 7.9
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 136 bits (329), Expect = 4e-31
Identities = 61/72 (84%), Positives = 65/72 (90%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 217 TRIIDVVYNASN 252
TRIIDVVYNASN
Sbjct: 76 TRIIDVVYNASN 87
Score = 106 bits (254), Expect = 5e-22
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
ELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +K
Sbjct: 89 ELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKK 148
Query: 435 Y 437
Y
Sbjct: 149 Y 149
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 136 bits (329), Expect = 4e-31
Identities = 61/72 (84%), Positives = 65/72 (90%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 217 TRIIDVVYNASN 252
TRIIDVVYNASN
Sbjct: 76 TRIIDVVYNASN 87
Score = 128 bits (309), Expect = 1e-28
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
ELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +K
Sbjct: 89 ELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKK 148
Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
Y R++ AK+ LEEQF G+LLA
Sbjct: 149 YDERKKNAKISSLLEEQFQQGKLLA 173
Score = 72.1 bits (169), Expect = 1e-11
Identities = 29/35 (82%), Positives = 34/35 (97%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 174 CIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 128 bits (309), Expect = 1e-28
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
ELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +K
Sbjct: 69 ELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKK 128
Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
Y R++ AK+ LEEQF G+LLA
Sbjct: 129 YDERKKNAKISSLLEEQFQQGKLLA 153
Score = 76.2 bits (179), Expect = 6e-13
Identities = 44/72 (61%), Positives = 48/72 (66%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG C TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRK 55
Query: 217 TRIIDVVYNASN 252
TRIIDVVYNASN
Sbjct: 56 TRIIDVVYNASN 67
Score = 72.1 bits (169), Expect = 1e-11
Identities = 29/35 (82%), Positives = 34/35 (97%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 154 CIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 120 bits (289), Expect = 3e-26
Identities = 56/87 (64%), Positives = 70/87 (80%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA--IINKKRSQKTA 428
ELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLGRK+ K + E+ ++ KKRS+K
Sbjct: 89 ELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVM 148
Query: 429 RKYLARQRLAKVEGALEEQFHTGRLLA 509
+KYL RQ+ KVE ALE+QF +GR+LA
Sbjct: 149 KKYLERQKYGKVEQALEDQFTSGRILA 175
Score = 118 bits (284), Expect = 1e-25
Identities = 54/72 (75%), Positives = 61/72 (84%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+TGNF+W SE RK
Sbjct: 16 GKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARK 75
Query: 217 TRIIDVVYNASN 252
TRI DVVYNASN
Sbjct: 76 TRIADVVYNASN 87
Score = 69.3 bits (162), Expect = 7e-11
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
C++SRPGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 176 CISSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 108 bits (260), Expect = 1e-22
Identities = 49/73 (67%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
G R P+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+GNFSWGS+ TR
Sbjct: 15 GGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTR 74
Query: 214 KTRIIDVVYNASN 252
KTR++DVVYNAS+
Sbjct: 75 KTRVMDVVYNASS 87
Score = 58.4 bits (135), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR 359
ELVRTKTLVKNAIV VD TPF+ W+++HY L LG+
Sbjct: 89 ELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123
Score = 57.2 bits (132), Expect = 3e-07
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
C++SRPGQCGR DGY+LEG+EL FY R++ K+
Sbjct: 154 CISSRPGQCGRCDGYVLEGEELNFYRRRMDKKK 186
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 106 bits (255), Expect = 4e-22
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 214 KTRIIDVVYNASN 252
KTRI+DVVYNASN
Sbjct: 76 KTRILDVVYNASN 88
Score = 77.0 bits (181), Expect = 4e-13
Identities = 44/93 (47%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKK 410
ELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K
Sbjct: 90 ELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETK 149
Query: 411 RSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 509
+S RK R+ ++ +EEQF +GRLLA
Sbjct: 150 KSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLA 182
Score = 67.3 bits (157), Expect = 3e-10
Identities = 26/35 (74%), Positives = 33/35 (94%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 183 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 92.7 bits (220), Expect = 7e-18
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +1
Query: 40 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 219
KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++GNFSWGSE RK
Sbjct: 17 KRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGNFSWGSEGIARKV 76
Query: 220 RIIDV 234
R+I V
Sbjct: 77 RVIVV 81
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIK 598
V+SRPGQ GR DGYILEG+EL FY R I+
Sbjct: 112 VSSRPGQSGRVDGYILEGEELAFYQRAIR 140
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 91.9 bits (218), Expect = 1e-17
Identities = 43/72 (59%), Positives = 53/72 (73%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDTGNF+W SE +
Sbjct: 16 GKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGNFAWASEAIAHR 75
Query: 217 TRIIDVVYNASN 252
R++DVVYNA++
Sbjct: 76 VRLLDVVYNATS 87
Score = 68.5 bits (160), Expect = 1e-10
Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL-GRKKGAKLTEAEE--------AIINK 407
ELVRTKTLVKN IV VDA PF++WY HY + L KK K A E A +K
Sbjct: 89 ELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADK 148
Query: 408 ----KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 509
K S K R++ R+R +VE A+ +Q GR+LA
Sbjct: 149 YDVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLA 186
Score = 49.6 bits (113), Expect = 6e-05
Identities = 19/32 (59%), Positives = 27/32 (84%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
+ SRPGQ GRADG +LEG EL+FYL++++ K+
Sbjct: 188 ITSRPGQSGRADGILLEGAELQFYLKRLEKKK 219
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 91.1 bits (216), Expect = 2e-17
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 214 KTRIIDVVYNASN 252
KTRI+DVVY A+N
Sbjct: 173 KTRILDVVYIATN 185
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 392
ELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 187 ELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 86.6 bits (205), Expect = 5e-16
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
GK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+ GNFSW S+ T+
Sbjct: 16 GKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNFSWASQSITKG 75
Query: 217 TRIIDVVYNASNKNW 261
T+I++VVYNAS+ ++
Sbjct: 76 TKILNVVYNASDNDF 90
Score = 53.6 bits (123), Expect = 4e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
C++SRPGQ G +GYILEGKEL+FY +KI K+
Sbjct: 204 CISSRPGQTGSVEGYILEGKELDFYSKKISDKK 236
Score = 39.5 bits (88), Expect = 0.069
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKK----RSQK 422
+ VRT TLVK AI+ +D PFR W+ Y + K E+ KK + ++
Sbjct: 89 DFVRTNTLVKGAIIEIDPAPFRLWFLKFYGKDIASTDYYKSLESATFKTEKKVVVPKEEE 148
Query: 423 TARKYLARQRLAKVEGAL 476
K +A Q++A+ + AL
Sbjct: 149 NKEKTIA-QQIAETQVAL 165
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 73.7 bits (173), Expect = 3e-12
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C+ASRPGQCGRADGYILEGKELEFYLRKIK+K+ K
Sbjct: 115 CIASRPGQCGRADGYILEGKELEFYLRKIKAKKGK 149
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 69.7 bits (163), Expect = 6e-11
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 9/74 (12%)
Frame = +1
Query: 58 KKRKYELGRPAANTRL---------GPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECST 210
KKRKY LGR ANT+L Q+I ++R RGGN K RALRL G+F+WGS +
Sbjct: 23 KKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSADIS 82
Query: 211 RKTRIIDVVYNASN 252
K RI+ VVYN+++
Sbjct: 83 HKARILQVVYNSTS 96
Score = 46.4 bits (105), Expect = 6e-04
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSK 604
++SRPGQ G ADGYILEG EL FY +K+ K
Sbjct: 144 ISSRPGQVGTADGYILEGPELLFYQKKLAPK 174
Score = 32.7 bits (71), Expect = 7.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFR 320
ELVRT TLVK +V +D+ PF+
Sbjct: 98 ELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = +1
Query: 28 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 207
P GK P KR+YELGR TRLG + + +RS GGN+K+ LR D N + +
Sbjct: 12 PSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKDKT 71
Query: 208 TRKTRIIDVVYNASNKNWCVQR 273
TRK +I V N+++ ++ VQR
Sbjct: 72 TRKVKINTVKENSADPHY-VQR 92
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 62.9 bits (146), Expect = 6e-09
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Frame = +3
Query: 282 KNAIVVVDATPFRQWYESHYTLPLGR-----KKGAKLT--EAEEAIINKKRSQKTARKYL 440
K+AIV + PFRQW+E+ Y LG KKG +T EE + KKRS+ +K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 441 ARQRL--AKVEGALEEQFHTGRLLA 509
RQ L A VE +L+E+F TGRLLA
Sbjct: 61 TRQALPQANVEESLKEEFVTGRLLA 85
Score = 60.5 bits (140), Expect = 3e-08
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C++S+PGQ GRADGY+ EGKELEF+ +K+K+K+AK
Sbjct: 86 CISSKPGQVGRADGYLFEGKELEFFSKKLKAKKAK 120
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 60.9 bits (141), Expect = 3e-08
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
G +A I RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F + + R
Sbjct: 15 GAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFITTGKFR 74
Query: 214 KTRIIDVVYNASN 252
+++ VVY+ S+
Sbjct: 75 MAKLLQVVYHPSS 87
Score = 40.3 bits (90), Expect = 0.039
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSK 604
+ SRPGQ G A G++L+G EL+FY K K
Sbjct: 137 ITSRPGQVGMAQGHVLQGDELKFYADKFNKK 167
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 57.2 bits (132), Expect = 3e-07
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
G ++ RKKR + GR +NT++G + + +R RGG K RAL L GNFS+ S T K
Sbjct: 16 GLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGNFSFVSIQRTFK 75
Query: 217 TRIIDVVYNASN 252
+I+ V +N S+
Sbjct: 76 AKILSVAFNESS 87
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSK 604
+ SRPGQ GRADGYILEG+EL+++L+KI+ K
Sbjct: 148 ICSRPGQSGRADGYILEGQELDYFLKKIQKK 178
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/86 (34%), Positives = 50/86 (58%)
Frame = +1
Query: 28 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 207
P G+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 11 PSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPATGE 70
Query: 208 TRKTRIIDVVYNASNKNWCVQRPLSR 285
T+KT+I V N+++ N+ ++ L++
Sbjct: 71 TKKTKIEAVEANSADPNYVRRKLLTK 96
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
GK+ I KK+ + G NT L I R RGGN K++A+ L G+F W + ++
Sbjct: 9 GKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWKTMQLSK 68
Query: 214 KTRIIDVVYNASNKNWCVQRPLSR 285
++I+ V+YN +N +R LS+
Sbjct: 69 NSKILSVLYNQANLKLVQKRNLSK 92
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 55.2 bits (127), Expect = 1e-06
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
ELVRT+TLVKNAI+ Q Y HY L +G KK A T ++ +++ RK
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRK 78
Query: 435 YLARQRLAKVEGALEEQFHTGRLLAA 512
RQ+ K++ +EEQF +GRLLAA
Sbjct: 79 LEKRQQDHKLDPHIEEQFGSGRLLAA 104
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 55 RKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIID 231
RKKR++ELGR T+LG + V R+ GGNTK +T N SE +K +II
Sbjct: 21 RKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDASEKKIKKAKIIT 80
Query: 232 VVYNASNKNWCVQR 273
V N +N ++ VQR
Sbjct: 81 VKANPANSHY-VQR 93
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 28 PPAGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGSEC 204
P G+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 12 PSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDKSG 70
Query: 205 STRKTRIIDVVYNASNKNW 261
RK RII V+ N +N+ +
Sbjct: 71 KGRKVRIIRVLENPANRQF 89
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +1
Query: 55 RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 234
R KRK+ELGR +G Q++ + G +K R L+ D N + T+K ++ V
Sbjct: 20 RSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKTGKTQKVKMTTV 79
Query: 235 VYNASNKNW 261
N +NKN+
Sbjct: 80 TENPANKNY 88
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 43.2 bits (97), Expect = 0.006
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 28 PPAGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT-GNFSWGSE 201
P G+ P RKKRK+E+G P T +G +R + R GGN K + L+ T N +
Sbjct: 12 PTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATHANVADPET 70
Query: 202 CSTRKTRIIDVVYNASNK 255
+ RI +VV N +++
Sbjct: 71 GEVKCVRIEEVVKNPASQ 88
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 41.5 bits (93), Expect = 0.017
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
G + R KRKYE+G P T L + I R+ GGN K R T N + + +
Sbjct: 15 GLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAK 74
Query: 214 KTRIIDVVYNASNK 255
K +I++++ +NK
Sbjct: 75 KVKILEILETPANK 88
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 39.5 bits (88), Expect = 0.069
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 216
G+R P+R +RKYE+ R G Q + + RG TK +D N + +K
Sbjct: 16 GRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGAKVKK 74
Query: 217 TRIIDVVYNASNKNW 261
++I+ V+ N +N ++
Sbjct: 75 SKIVKVLENPTNNDY 89
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 39.1 bits (87), Expect = 0.091
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 58 KKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 234
KK K E+GRPAA T++ + + VR RG N K + + + N + +K + +V
Sbjct: 22 KKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQANKVCKKVVVTNV 81
Query: 235 VYNASNKNW 261
+ N +NK++
Sbjct: 82 IDNKANKHY 90
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 38.3 bits (85), Expect = 0.16
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 13 GISEGPPAGKRAPIRK-KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 189
G S P+G R+ K KR E GR A TR+G + + +RG TK RA N
Sbjct: 6 GSSLRKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVI 65
Query: 190 WGSECSTRKTRIIDVVYNASNKNW 261
+ S++ ++ V+ N +N ++
Sbjct: 66 DPKDNSSKNVEMLTVLENGANSHF 89
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 38.3 bits (85), Expect = 0.16
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +1
Query: 28 PPAGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKYRALRLDTGNFSWG 195
P GKR K KRKY GRP T L + VR+RGG+ K +A ++ S
Sbjct: 12 PSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVVSNP 71
Query: 196 SECSTRKTRIIDVVYNASNKNW 261
RK RI+ +V +++ +
Sbjct: 72 KTGEARKARILRIVETPAHREY 93
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 36.7 bits (81), Expect = 0.48
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 281 DKGLCTHQFLLDALYTTSMIRVLRVEHSDPQEKLPVS 171
D GL + L D +Y T I +R EH DP++ LP S
Sbjct: 302 DLGLADYNLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 36.7 bits (81), Expect = 0.48
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 PPAGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSE 201
P GK+ +RK +K L G P +LG V R RGGN K R N E
Sbjct: 15 PSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIPKE 74
Query: 202 CSTRKTRIIDVVYNASNKNW 261
+ K +II ++ +N ++
Sbjct: 75 RKSVKAKIISIISTPANPDF 94
>UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 35.9 bits (79), Expect = 0.84
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 378 TEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAAW 515
T EE I+NKK S+K +KY ++ AK+ L E F L W
Sbjct: 105 TPEEEEILNKKHSKKIQKKYEEWKKKAKISLLLREHFCQASSLPTW 150
>UniRef50_Q2IEW0 Cluster: Trigger factor; n=3; Cystobacterineae|Rep:
Trigger factor - Anaeromyxobacter dehalogenans (strain
2CP-C)
Length = 429
Score = 33.5 bits (73), Expect = 4.5
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = +3
Query: 411 RSQKTARKYLARQRLAKVEGALEEQFHTGRLLAAWRVAQVSVVAP 545
R K RK L RQ A+VEG + E+ T A RV + VVAP
Sbjct: 45 RPGKAPRKVLERQFKAEVEGEVAERIVTETFTEAVRVESLPVVAP 89
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 33.1 bits (72), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 40 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 138
+RAP K YE R AA TRL P + ++R R
Sbjct: 272 ERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 33.1 bits (72), Expect = 6.0
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 7 ITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGN 183
+ G+ G AG+R P+R++ + E RP A+ R P H+ R+R G R L + +
Sbjct: 2 VDGLCRGL-AGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARR 59
Query: 184 FSWGSECSTRKTRIIDV 234
F + S S ++ I V
Sbjct: 60 FRYRSGSSRHASQAIPV 76
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 33.1 bits (72), Expect = 6.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 ELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 416
EL KTL K A+ ++D PF W + L R G L A+E +INK+ +
Sbjct: 198 ELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQE-LINKQNT 251
>UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina
acetivorans|Rep: Predicted protein - Methanosarcina
acetivorans
Length = 90
Score = 33.1 bits (72), Expect = 6.0
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 YESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA-RKYLARQRLAKVEGALEE 482
Y + +TL R + A EA E ++ K +K A K LA+ L K+EG LEE
Sbjct: 31 YRNIWTLNGSRNRSATSKEACEKLLAKNCLRKIACEKLLAKNCLRKIEGLLEE 83
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 291 IVVVDATPFRQWYESHYTLPLGRKK 365
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_Q38X90 Cluster: Hypothetical lipoprotein; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Hypothetical
lipoprotein - Lactobacillus sakei subsp. sakei (strain
23K)
Length = 239
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 396 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTG--RLLAAWRVAQVSVVAPMVT 554
II KKR R A R ++ A E+F + AAW +S+VAP++T
Sbjct: 87 IIRKKRDWLARRHERALSRTVTIDDATRERFEECFYEIEAAWTTNDLSLVAPLIT 141
>UniRef50_A0L8H8 Cluster: DNA repair protein RecN; n=2; cellular
organisms|Rep: DNA repair protein RecN - Magnetococcus
sp. (strain MC-1)
Length = 560
Score = 32.7 bits (71), Expect = 7.9
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 309 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 488
T +R WYESH L R+KG E + + +TA Y ++ ++E
Sbjct: 162 TLYRSWYESHKALEQLREKGRDAAERRAFLSFQLEELETAGVYPGEEQ--ELEHQRTRLA 219
Query: 489 HTGRLLAA 512
H GRL A
Sbjct: 220 HAGRLAEA 227
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 306 ATPFRQWYESHYTLPLGRKKGAKLTEAE 389
ATPF Q + +HY L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,359,904
Number of Sequences: 1657284
Number of extensions: 12299470
Number of successful extensions: 35078
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 33800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35048
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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