Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0583
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   110   2e-25
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   110   2e-25
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.44 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    29   0.76 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   5.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   5.4  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  110 bits (264), Expect = 2e-25
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = +1

Query: 40  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 219
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 220 RIIDVVYNASN 252
           RII V Y+ SN
Sbjct: 77  RIIQVAYHPSN 87



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 42/85 (49%), Positives = 52/85 (61%)
 Frame = +3

Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
           ELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK
Sbjct: 89  ELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRK 142

Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
           + AR   +KV+ ALE QF  GRL A
Sbjct: 143 HSARLGDSKVDSALETQFAAGRLYA 167



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +2

Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
           V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 169 VSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  110 bits (264), Expect = 2e-25
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = +1

Query: 40  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 219
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 220 RIIDVVYNASN 252
           RII V Y+ SN
Sbjct: 77  RIIQVAYHPSN 87



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 42/85 (49%), Positives = 52/85 (61%)
 Frame = +3

Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
           ELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK
Sbjct: 89  ELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRK 142

Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
           + AR   +KV+ ALE QF  GRL A
Sbjct: 143 HSARLGDSKVDSALETQFAAGRLYA 167



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +2

Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSKR 607
           V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 169 VSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 19  SEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 168
           S+G    K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 260 QFLLDALYTTSMIRVLRVEHSDPQEKLPVSRR 165
           QF L+ + T S  +V R  H DP  KLP  RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 73   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 225
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 306 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 485
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 486 FHTGRLLA 509
                +LA
Sbjct: 814 TDPQTILA 821


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 328 YHCLNGVASTTTIAFLTRVFVRTNS 254
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 252 QELVRTKTLVKNAIVVV 302
           QEL R+K ++KNA+++V
Sbjct: 592 QELERSKRIIKNALIIV 608


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 544 GATTLTWATRHAASKRPVWNCSSRAPS 464
           G+ T  W   ++ SK P WN  SR P+
Sbjct: 833 GSRTPAW---NSGSKTPAWNSGSRTPA 856



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 544 GATTLTWATRHAASKRPVWNCSSRAPS 464
           G+ T  W   ++ +K P WN  SR P+
Sbjct: 851 GSRTPAW---NSGNKTPAWNAGSRTPA 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,097
Number of Sequences: 5004
Number of extensions: 48843
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)