Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0583
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 106 1e-23
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 106 2e-23
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.20
11_01_0551 + 4361640-4363386,4363443-4363687 29 2.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.2
11_06_0198 - 21158350-21159528 29 4.2
03_01_0350 - 2753217-2754152 29 4.2
11_01_0307 + 2304500-2306023 28 5.6
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.4
04_03_0549 - 17043135-17043351,17043641-17043846 27 9.7
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 27 9.7
01_06_0657 - 30940020-30940034,30940226-30940861 27 9.7
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 106 bits (255), Expect = 1e-23
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 214 KTRIIDVVYNASN 252
KTRI+DVVYNASN
Sbjct: 76 KTRILDVVYNASN 88
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/35 (74%), Positives = 33/35 (94%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 200 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 25/110 (22%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA--------------------- 371
ELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 90 ELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGL 149
Query: 372 ----KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 509
K +AE K+S RK RQ+ ++ +EEQF +GRLLA
Sbjct: 150 YVMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLA 199
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 106 bits (254), Expect = 2e-23
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 214 KTRIIDVVYNASN 252
KTRI+DVVYNASN
Sbjct: 76 KTRILDVVYNASN 88
Score = 81.0 bits (191), Expect = 7e-16
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKK 410
ELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K
Sbjct: 90 ELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAK 149
Query: 411 RSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 509
+S RK RQ+ ++ +EEQF +GRLLA
Sbjct: 150 KSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLA 182
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/35 (74%), Positives = 33/35 (94%)
Frame = +2
Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
C++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 183 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 34 AGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 198
AG+ R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 261 AGELFTWGSNREGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 360 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA-AWRVAQVSV 536
+ G+ T+A E+I KK+ + +K + + A V A EE+ G + WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 537 VAPMV 551
A +
Sbjct: 349 GADYI 353
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 203 VQLAKPVSLMLCIMHLTRIGAYKDPCQECNC-CSR 304
+ L++P I+ L A+ +PC+ECN C R
Sbjct: 549 IPLSQPEGDQSAILSLASASAFAEPCEECNLPCQR 583
>11_06_0198 - 21158350-21159528
Length = 392
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 566 CLLRCNHRRDHTDLGDSPRSQQTPC 492
CL+ C HRR D D + PC
Sbjct: 145 CLMDCRHRRQEVDADDDNHHGRDPC 169
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 13 GISEGPPAGKRAPIRKKRKYELGRPAANTR 102
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>11_01_0307 + 2304500-2306023
Length = 507
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 568 FAF*DVTIGATTLTWATRHAASKRPVWNCS 479
FAF + +GA +L A H AS PVW +
Sbjct: 67 FAFGFLRVGAASLDLAVVHLASSFPVWRAT 96
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 363 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 494
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 341 IMRLIPLPEWSCIYYNNCILDKGL 270
++ L+ +P+WS +YY N +DK L
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 337 CDSYHCLNGVASTTTIAFLTRVFVRTNSC*MHYTQHQ*YGFCELNIPIP 191
C Y L GV S IA L+ + R S H+ YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 5 GSLA*AKGHRLGNVRPYARRGSMS*GVPLQTPGSALSES 121
G++ A G+R+ P R GSMS G + GS++S S
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHS 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,629
Number of Sequences: 37544
Number of extensions: 357926
Number of successful extensions: 1140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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