Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0583
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              114   5e-26
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           33   0.15 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.9  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)                    28   5.7  
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)                  27   9.9  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    27   9.9  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +1

Query: 49  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 228
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 229 DVVYNASN 252
           DVVYNASN
Sbjct: 64  DVVYNASN 71



 Score =  113 bits (272), Expect = 1e-25
 Identities = 55/85 (64%), Positives = 64/85 (75%)
 Frame = +3

Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
           ELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK
Sbjct: 73  ELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRK 132

Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
             AR+  AKV   +EEQF TGRL A
Sbjct: 133 LEARKANAKVAPGMEEQFVTGRLYA 157



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +2

Query: 467 GCSRRAIPHRAFAGCVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
           G   + +  R +A CV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 145 GMEEQFVTGRLYA-CVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/49 (30%), Positives = 32/49 (65%)
 Frame = +1

Query: 109 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNK 255
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +NK
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANK 85



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 252 QELVRTKTLVKNAIVVVDATPFRQWYESH 338
           +E +    +VK +IV VD  PF  W++ +
Sbjct: 85  KEHIERNVIVKGSIVQVDNKPFEDWFQEY 113


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 363 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 500
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 405 KKRSQKTARKYLARQRLAKVEGALEE 482
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 485 IPHRAFAGCVASRPGQCGRADGYILEGKELEFY 583
           I  R F GC+A R  +  RA GY + G  L+FY
Sbjct: 19  IVQRHFRGCLACRCAEKARASGYRMFG--LQFY 49


>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
          Length = 824

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 96  VCSGTP*LILPLLAYGRTFPSRWPF 22
           + SG     +PL +YGRT   RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 86  PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 211
           P ++P   L  +TP VHVV +    R V   +TS+  +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,663,883
Number of Sequences: 59808
Number of extensions: 407329
Number of successful extensions: 1074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)