Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0583
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 123 1e-28
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 2.8
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.6
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 6.6
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.6
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.6
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.6
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 6.6
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 6.6
AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical... 27 8.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 123 bits (296), Expect = 1e-28
Identities = 58/85 (68%), Positives = 67/85 (78%)
Frame = +3
Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
ELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +K
Sbjct: 89 ELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKK 148
Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
Y RQ+ A V+ L EQF+TGRLLA
Sbjct: 149 YTERQKTAAVDALLIEQFNTGRLLA 173
Score = 109 bits (262), Expect = 2e-24
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
G P+ KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15 GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74
Query: 214 KTRIIDVVYNASN 252
KTRI+D +YNA+N
Sbjct: 75 KTRIVDTMYNATN 87
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/34 (70%), Positives = 32/34 (94%)
Frame = +2
Query: 512 VASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 175 ISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 107 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 247
++ E+TP + EI+ST VW V ++ K +S C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 357 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 482
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 160 ALRLDTGNFSWGSECSTRKTRIIDVVYN 243
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical
protein Y66D12A.17 protein.
Length = 830
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 257 FLLDALYTTSMIRVLRVEHSDPQEKL 180
F+ A+Y SM R LR+ H DP+ L
Sbjct: 743 FIEKAIYHVSMARCLRLMHKDPRVHL 768
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,279
Number of Sequences: 27780
Number of extensions: 290021
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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