Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0583
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   106   1e-23
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   105   3e-23
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    30   1.5  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.7  
At4g37760.1 68417.m05345 squalene monooxygenase, putative / squa...    28   6.1  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    27   8.1  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  106 bits (254), Expect = 1e-23
 Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
           GK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75

Query: 214 KTRIIDVVYNASN 252
           KTR++DVVYNASN
Sbjct: 76  KTRVLDVVYNASN 88



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 10/95 (10%)
 Frame = +3

Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----N 404
           ELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +     
Sbjct: 90  ELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEE 149

Query: 405 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 509
            K+S    RK  +RQ    ++  +E+QF +GRLLA
Sbjct: 150 VKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLA 184



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = +2

Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
           C++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 185 CISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  105 bits (252), Expect = 3e-23
 Identities = 50/73 (68%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 213
           GK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TR
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75

Query: 214 KTRIIDVVYNASN 252
           KTRI+DV YNASN
Sbjct: 76  KTRILDVAYNASN 88



 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 43/85 (50%), Positives = 53/85 (62%)
 Frame = +3

Query: 255 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 434
           ELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    RK
Sbjct: 90  ELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRK 145

Query: 435 YLARQRLAKVEGALEEQFHTGRLLA 509
              RQ    ++  LEEQF +GRLLA
Sbjct: 146 LEMRQEGRALDSHLEEQFSSGRLLA 170



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = +2

Query: 509 CVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 613
           C+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 171 CIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 337 CDSYHCLNGVASTTTIAFLTRVFVRTNSC*MHYTQHQ*YGFCELNIPIP 191
           C  Y  L GV S+  +A L+ +  R  S  +H+     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 258 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 386
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g37760.1 68417.m05345 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 525

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 337 CDSYHCLNGVASTTTIAFLTRVFVRTNSC*MHYTQHQ*YGFCELNIPIP 191
           C  Y  L GV S+  +A L+ +  R  S  +H+     +G   L +P+P
Sbjct: 424 CFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLP 472


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -2

Query: 308 CIYYNNCILDKGLCTHQFLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSAR 156
           C+ +N CI++ G       +D  Y TS++R+ ++++ +  +   V  +  R
Sbjct: 483 CVLHNGCIVETGSHDKLMEIDGKY-TSLVRLQQMKNEESCDNTSVGVKEGR 532


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,679
Number of Sequences: 28952
Number of extensions: 267370
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)