Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0582
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   7.3  

>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 90  DLLQRTNLGT--INTYLLYNSSLKHSPGCVTCVNETTNRISRSKI 218
           D+L+ +NL +  ++  +LYNS +  SP   + + + TNR ++ ++
Sbjct: 162 DVLRISNLSSKILHRLILYNSKVGDSPRFCSALFQITNRATQLRL 206


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 171 RSLENASTRSCKVNTYLSSPDLYVVGDPRP 82
           RS+   S +S K NTYLSSP  Y  G P+P
Sbjct: 140 RSILVHSVKSDK-NTYLSSPGFY--GTPQP 166


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 285 YMYICYGKSRYCGKCTHF 338
           YM +  GKSR+C KC  +
Sbjct: 88  YMTLQNGKSRFCEKCQEY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,761
Number of Sequences: 5004
Number of extensions: 58109
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)