Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0582
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    29   2.1  
At5g06630.1 68418.m00749 proline-rich extensin-like family prote...    28   6.3  
At4g08410.1 68417.m01390 proline-rich extensin-like family prote...    28   6.3  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    27   8.4  

>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 129 TYLSSPDLYVVGDPRPRAFRASRLTLLKPMPPP 31
           TY SSP  YV   P P  +  S   + K  PPP
Sbjct: 453 TYKSSPPPYVYSSPPPPYYSPSPKVVYKSPPPP 485


>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 440

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -1

Query: 150 TRSCKVNTYLSSPDLYVVGDPRPRAFRASRLTLLKPMPPP 31
           T S KVN Y S P  YV   P P  +  S     K  PPP
Sbjct: 69  TPSPKVN-YKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPP 107


>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 707

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = -1

Query: 144 SCKVNTYLSSPDLYVVGDPRPRAFRASRLTLLKPMPPP 31
           S KVN Y S P  YV G P P  +  S     K  PPP
Sbjct: 268 SPKVN-YKSPPPPYVYGSPPPPYYSPSPKVDYKSPPPP 304



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = -1

Query: 144 SCKVNTYLSSPDLYVVGDPRPRAFRASRLTLLKPMPPP 31
           S KVN Y S P  YV G P P  +  S     K  PPP
Sbjct: 318 SPKVN-YKSPPPPYVYGSPPPPYYSPSPKVDYKSPPPP 354


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -1

Query: 144 SCKVNTYLSSPDLYVVGDPRPRAFRASRLTLLKPMPPP 31
           S KVN Y S P  YV   P P  +  S +   K  PPP
Sbjct: 570 SPKVN-YKSPPPPYVYSSPPPPYYSPSPMVDYKSTPPP 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,033
Number of Sequences: 28952
Number of extensions: 284889
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)