Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0580
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    42   1e-04
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    31   0.24 
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    28   1.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    28   1.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   3.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.9  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 2   SDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXADIRYTM--GGIENLEL 175
           +D+EAW EL ++Y+ V+ +  A+FC EE                D+ + +      N   
Sbjct: 137 NDLEAWAELADIYVSVEAFESAIFCYEEMVLLQPFEPRLFARLGDLYFVLAQSNATNYWF 196

Query: 176 AKLYYCQSVKL 208
           +  +YC+SV++
Sbjct: 197 SLKHYCRSVEI 207


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 196 ICETQSR*YEVAAGSVLDNKNLLNHYKSSGN 288
           +C   S  Y+++A S +  K++LNHY  S N
Sbjct: 352 VCGVLSEVYDISASSTVTLKDILNHYSKSYN 382


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   RCGSLARALQPVPSGSGLLSCRVLRR 81
           +CGS+   L P P G+GL++  V +R
Sbjct: 160 KCGSVTVRLVPAPRGAGLVAAPVTKR 185


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 469 VTLCMLISVFRINTIRNLFIVALLRGIADTRKLQ*YLVTVYRRISSFNQYIQYQ 630
           V+LC L+S + +NT  + + +  +  +     LQ Y+  +Y R+ S  Q++  Q
Sbjct: 309 VSLCNLVSSWILNTKTHSYALVTVFKLYFELTLQVYVRNLYARLESPQQFVLVQ 362


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 238 SVLDNKNLLNHYKSSGNSGKRKEVWKLC 321
           S+L++      Y  +GNS K+K+  KLC
Sbjct: 497 SLLESDEKATEYSQAGNSKKKKKFKKLC 524


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 220 YEVAAGSVLDNKNLLNHYKSS-GNSGKRKEVWKLCHWAQSKATK 348
           Y +   S+++ KN+L + K+      K++E +KL  W QS+ T+
Sbjct: 271 YSLIEQSLINTKNVLGNKKTGVSYLAKKEEEYKLL-WEQSRETE 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,729
Number of Sequences: 5004
Number of extensions: 68023
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)