Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0580
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_672| Best HMM Match : PAN (HMM E-Value=0.29) 29 3.1
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 7.3
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 7.3
SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_15767| Best HMM Match : DUF54 (HMM E-Value=7.6) 28 7.3
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 7.3
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 28 7.3
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 28 9.6
>SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -3
Query: 113 SGCEADGGVVLRRRTRHESSPEP--EGTGCKAL 21
SGC+AD G +R RTR ++P P G C+AL
Sbjct: 49 SGCDADCGGGVRERTRFCTNPVPGWGGRHCEAL 81
>SB_672| Best HMM Match : PAN (HMM E-Value=0.29)
Length = 290
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -3
Query: 251 LSSTDPAATSYYLD*VSQIDSNTVLPTP---DFRCRPLCTEYQLASDDASGCEADGGVVL 81
++ +D + S Y V + N + T +F C LCTEY L DA G VL
Sbjct: 109 IARSDGSTRSVYNQIVPDLGGNLIEKTSTEDEFSCAKLCTEY-LKCGDAGFQPRSGVCVL 167
Query: 80 RRRTRHESSPEPEGTG 33
R R P GTG
Sbjct: 168 RDAAR---IPRGGGTG 180
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 566 NFLVSAIPLSNATINRFLIVLIRNTLINIHNVTPKNLDAESQK 438
N +V A+P +ATIN LI + + + N PKN+ ++
Sbjct: 504 NKVVEALPKGDATINNRLISAVIQVVKAMDNEIPKNVKVTEEE 546
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 25 ALQPVPSGSGLLSCRVLRRRTTPPSASQPLASSEAS*YSVHNGRHRKS 168
+LQP PS + LSC +R T S+S S + S + H R++
Sbjct: 2475 SLQPAPSIADALSCMTSSQRVTAQSSSSTTMSPQPSVPNEHPAVPRRN 2522
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 566 NFLVSAIPLSNATINRFLIVLIRNTLINIHNVTPKNLDAESQK 438
N +V A+P +ATIN LI + + + N PKN+ ++
Sbjct: 166 NKVVEALPKGDATINNRLISAVIQVVKAMDNEIPKNVKVTEEE 208
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 10 GSLARALQPVPSGSGLLSCRVLRRRTTPPSASQPLASSEAS 132
GS A P+G G+ + R P S++QPL+S S
Sbjct: 194 GSTATGQHATPTGHGIPPSSTPQARAPPHSSTQPLSSHSGS 234
>SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 220 YEVAAGSVLDNKNLLNHYKSSGNSGKRKEVWKLCHWAQSKATK 348
YEV + DNK LLN + G L HW + TK
Sbjct: 143 YEVFEVATADNKRLLNTPATQGEELTSLPPLALTHWVKQSLTK 185
>SB_15767| Best HMM Match : DUF54 (HMM E-Value=7.6)
Length = 168
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 566 NFLVSAIPLSNATINRFLIVLIRNTLINIHNVTPKNLDAESQK 438
N +V A+P +ATIN LI + + + N PKN+ ++
Sbjct: 19 NKVVEALPKGDATINNRLISAVIQVVKAMDNEIPKNVKVTEEE 61
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 566 NFLVSAIPLSNATINRFLIVLIRNTLINIHNVTPKNLDAESQK 438
N +V A+P +ATIN LI + + + N PKN+ ++
Sbjct: 151 NKVVEALPKGDATINNRLISAVIQVVKAMDNEIPKNVKVTEEE 193
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 566 NFLVSAIPLSNATINRFLIVLIRNTLINIHNVTPKNLDAESQK 438
N +V A+P +ATIN LI + + + N PKN+ ++
Sbjct: 535 NKVVEALPKGDATINNRLISAVIQVVKAMDNEIPKNVKVTEEE 577
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 235 GSVLDNKNLLNHYKSSGNSGKRKEVWKLCHWAQSKAT 345
G + DN YK SGN+G + W + + A+ + T
Sbjct: 27 GDIRDNAVPPPKYKGSGNNGLLLQTWSVLYLAREETT 63
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 304 EVWKLCHWAQSKATKQTQPTSQLSQMMLSLAITE 405
++ +LC W Q K T+ Q +S Q+ +AI E
Sbjct: 704 DIDRLCQWIQEKLTEVNQLSSTTQQLSDEVAILE 737
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,580,387
Number of Sequences: 59808
Number of extensions: 504907
Number of successful extensions: 1264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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