Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0580
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical...    69   3e-12
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    30   2.1  
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    28   6.4  

>AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical
           protein Y57G7A.10a protein.
          Length = 294

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/76 (42%), Positives = 46/76 (60%)
 Frame = +2

Query: 2   SDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXADIRYTMGGIENLELAK 181
           +D EAW +L  L+L   D ++AV C EE               AD+RYT GG EN+ELA+
Sbjct: 152 NDPEAWLQLSELFLLENDVAKAVHCLEECVLISPLNSMYFRRLADLRYTQGGAENVELAR 211

Query: 182 LYYCQSVKLNPDNMRS 229
            YY +++K+NP ++RS
Sbjct: 212 SYYERALKINPTDLRS 227


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 251 LSSTDPAATSYYLD*VSQIDSNTVLPTPDFRCRPL 147
           L ST P   + YL  +  I    ++P  DFRCRPL
Sbjct: 215 LLSTTPHYENAYLHDLVDIILYLIMPPEDFRCRPL 249


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 409 INWYFSLCYVFWDSASRFLGVT 474
           I +Y   CY+++DSASRF   T
Sbjct: 136 ILFYEKFCYIYYDSASRFFVFT 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,391,637
Number of Sequences: 27780
Number of extensions: 388689
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)