Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0580
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 431 VMSFGTQHRGFWESHY 478
           +++ G QH G W+S Y
Sbjct: 923 IVASGQQHAGGWQSIY 938


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 343 TKQTQPTSQLSQMMLSLAITE*INW----YFSLCYVFWDS 450
           TKQ Q    +++M+ ++ IT  I W       L YV+ DS
Sbjct: 249 TKQVQSRKTITRMLSAVVITFFICWAPFHVQRLLYVYEDS 288


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 196 ICETQSR*YEVAAGSVLDNKNLLNHYKSSGNSGKRKEVWKLCHWAQSKATKQTQPTSQLS 375
           IC    R Y  +  S+ ++K++  H + S N  +RKE+ ++    + +     + TSQ  
Sbjct: 34  ICNICKRVYS-SLNSLRNHKSIY-HRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQ 91

Query: 376 Q 378
           Q
Sbjct: 92  Q 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,503
Number of Sequences: 438
Number of extensions: 4704
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)