Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0580
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28220.1 68418.m03417 expressed protein predicted proteins, A... 59 3e-09
At3g04830.2 68416.m00524 expressed protein 59 3e-09
At3g04830.1 68416.m00523 expressed protein 59 3e-09
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi... 30 1.5
At2g48160.1 68415.m06031 PWWP domain-containing protein 29 2.6
At5g14260.3 68418.m01668 SET domain-containing protein low simil... 29 3.4
At5g14260.2 68418.m01667 SET domain-containing protein low simil... 29 3.4
At5g14260.1 68418.m01666 SET domain-containing protein low simil... 29 3.4
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 29 4.5
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 29 4.5
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 29 4.5
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 29 4.5
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 29 4.5
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 29 4.5
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 4.5
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 28 5.9
>At5g28220.1 68418.m03417 expressed protein predicted proteins,
Arabidopsis thaliana, D.melanogaster, C.elegans and
S.pombe
Length = 316
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +2
Query: 2 SDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXADIRYTMGGIENLELAK 181
+D +AW+EL LYL +Q Y +A FC EE A++ YT+GG+EN+ A+
Sbjct: 177 ADHDAWRELAELYLSLQMYKQAAFCYEELILSQPTVPLYHLAYAEVLYTIGGVENIISAR 236
Query: 182 LYYCQSVKL 208
YY +V L
Sbjct: 237 KYYAATVDL 245
>At3g04830.2 68416.m00524 expressed protein
Length = 299
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 2 SDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXADIRYTMGGIENLELAK 181
+D +AW+EL +Y+ +Q Y +A FC EE AD+ YT+GG+ENL A+
Sbjct: 160 ADHDAWRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAAR 219
Query: 182 LYYCQSVKL 208
YY ++ L
Sbjct: 220 KYYAATIDL 228
>At3g04830.1 68416.m00523 expressed protein
Length = 303
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 2 SDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXADIRYTMGGIENLELAK 181
+D +AW+EL +Y+ +Q Y +A FC EE AD+ YT+GG+ENL A+
Sbjct: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAAR 223
Query: 182 LYYCQSVKL 208
YY ++ L
Sbjct: 224 KYYAATIDL 232
>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 723
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 238 SVLDNKNLLNHYKSSGNSGKRKEVWKLCHWAQSKATKQTQPT 363
SV ++L+ ++ SG++GK E+WKL + K T+ T T
Sbjct: 519 SVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNT 560
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 206 VSQIDSNTVLPTPDFRCRPLCTEYQLASDDASGCEADGG 90
V + SN+ L P F L + + SD GC+++GG
Sbjct: 1007 VDEYGSNSTLQLPGFCMPALLKDEEGGSDSEGGCDSEGG 1045
>At5g14260.3 68418.m01668 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 723 EMRSVLSSYKTCCPVSPCI 667
EM+SV+SS CP+SPC+
Sbjct: 412 EMQSVISSQGPVCPMSPCM 430
>At5g14260.2 68418.m01667 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 723 EMRSVLSSYKTCCPVSPCI 667
EM+SV+SS CP+SPC+
Sbjct: 412 EMQSVISSQGPVCPMSPCM 430
>At5g14260.1 68418.m01666 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 723 EMRSVLSSYKTCCPVSPCI 667
EM+SV+SS CP+SPC+
Sbjct: 412 EMQSVISSQGPVCPMSPCM 430
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 172 KCGSVTVRMVPAPRGSGIVAARVPKK 197
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKK 206
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 552 RNSSKQCYYK*ISNCINPKYTYQH 481
R + + CYY NC+NPK ++H
Sbjct: 60 RMNPRDCYYWLNGNCLNPKCGFRH 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKK 205
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKK 205
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKK 205
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 4 RCGSLARALQPVPSGSGLLSCRVLRR 81
+CGS+ + P P GSG+++ RV ++
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKK 205
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 566 NFLVSAIPLSNATINR--FLIVLIRNTLINIHNVTPKNLDAESQKT*HNEKY 417
N L+SA+ L +++ F+ N L+N N++P+N D Q + +E Y
Sbjct: 897 NPLISAVQLIGDGVSQVQFIGNQAVNNLVNFLNISPENSDTNEQSSVDDEVY 948
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,128,930
Number of Sequences: 28952
Number of extensions: 350690
Number of successful extensions: 881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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