Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0579
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun... 42 6e-05
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 30 0.34
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 29 0.59
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 2.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 5.5
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 26 5.5
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 5.5
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 25 7.2
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.5
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 9.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 412
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 305 GQVVKNFGPGEVFGELAILYKAKRFASIRCITEARV-WTLERRVFQKIMVRSERQEQEDN 481
G + PGE FGELA++Y A R AS+ T V + L+R F++I+ + +++
Sbjct: 210 GNYITTISPGEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSFRRIVFENAYRQRMLY 269
Query: 482 IRFLSSVPL 508
L VP+
Sbjct: 270 ESLLEEVPI 278
Score = 39.1 bits (87), Expect = 5e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 508 LQEIHHIELAQISDFLKREFFSTGTAVVRQGDRGDKFYIIRGGEVVV 648
L + + +I+D L+ + G+ V+RQGD G++FY+I GE V
Sbjct: 279 LSSLDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEV 325
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +3
Query: 72 TDLQYDVFEKDERSAEQIRKAIMMNDFLRNLMDDERLNAVVGAMMTQDFEAGSLIIREGE 251
T + VFE R + ++++ + + +D + + A+ T ++AGS++IR+G+
Sbjct: 252 TSFRRIVFENAYRQ-RMLYESLLEEVPILSSLDKYQRQKIADALQTVVYQAGSIVIRQGD 310
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 565 FFSTGTAVVRQGDRGDKFYIIRGG 636
F+ GT +VRQGD D Y I G
Sbjct: 536 FYKKGTTIVRQGDHADGLYYIIDG 559
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.1 bits (62), Expect = 0.59
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 467 EQEDNIRFLS---SVPLCKKYTILN*HKYPIS*KENSSPPVQRWSDKAIVEISST 622
E E NI F + SV +K T L KY + +EN V++ SDK I EI T
Sbjct: 73 ELEKNIGFKAKQESVSFQQKRTFLQIRKYLETIEENEFDKVRKSSDKLINEIEKT 127
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 45 PTFDAARSLTDLQYDVFEKDERSAEQIRKAIMMN 146
PTF+ A +L ++ E+ E+S RKAI +N
Sbjct: 462 PTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVN 495
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 544 IFVLIQYGVFLAKRHRRKK 488
+ +LI G+FL KRH+R K
Sbjct: 256 VLILIGLGIFLWKRHQRSK 274
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 356 ILYKAKRFASIRCITEARV------WTLERRVFQKIMVRSERQEQEDNIR 487
+LY + R A +RC+T A++ T E +Q+IM +QE + +R
Sbjct: 97 MLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSLSKQEDQSPLR 146
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 269 QTDDFTLSFTNDETSSFEILCHHCTNY 189
+T F+LS ND+ SSF + C +Y
Sbjct: 719 RTRTFSLSLLNDDGSSFALKCIRIKHY 745
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 428 FSLMSTPSPRLYIVLKRIVWLYIRLPVHQKLRLVQSS 318
+ + +P P KR +WL+ L H+ L L Q+S
Sbjct: 64 YESLYSPKPNNPFSFKRRIWLHGVLRFHRPLHLFQTS 100
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 338 VFGELAILYKAKRFASIRCITEARVWTLERRVFQKIMVRSERQEQEDN 481
V GEL K A++ ++ VW L+R ++ ++ S++ E +N
Sbjct: 885 VVGELPFFSKTCYNATVVAELDSAVWILDREGWETMLKSSDKAEVIEN 932
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 437 QKIMVRSERQEQEDNIRFLSSVPLCKKY 520
Q++MVR E E + F S+P+ +KY
Sbjct: 92 QQVMVRHEAAEALGALGFTESLPVLEKY 119
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 490 SFFCAALQEIHHIELAQISD 549
SF C AL +++H+ + ++D
Sbjct: 83 SFLCGALDDLNHVNVNSVTD 102
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 225 GSLIIREGESEVICLFRLQDNLKR*KVAKSLRT 323
G+ IIR G V CL R++ N ++ + S+R+
Sbjct: 825 GAGIIRFGTQNVGCLLRIEPNYEQNLIRLSIRS 857
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 311 LGHFLTLQIVLKPKQTDDFTLSFTNDETS 225
L +FL++Q + P D LSFT+++ S
Sbjct: 143 LSYFLSMQDLAPPLIKSDENLSFTDEDVS 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,108
Number of Sequences: 5004
Number of extensions: 57515
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -