Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0579
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26) 75 5e-14
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39) 50 2e-06
SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26) 48 9e-06
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23) 40 0.002
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17) 32 0.35
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21) 31 0.62
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097) 31 1.1
SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26) 31 1.1
SB_32411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_58075| Best HMM Match : SRCR (HMM E-Value=5e-33) 29 4.4
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22) 29 4.4
SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 28 7.6
SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26)
Length = 376
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +2
Query: 263 LFVSASGQFEALKSGQVVKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQK 442
L+V G+ + K G V+ + GPG+ FGELAILY R AS+R T ++W ++R+ FQ
Sbjct: 190 LYVLEEGKCQVTKEGTVLGHMGPGKAFGELAILYNCTRTASVRAQTSGKLWAIDRQTFQT 249
Query: 443 IMVRSERQEQEDNIRFLSSVPLCK 514
IM+++ +++ FL SV L K
Sbjct: 250 IMMKTGLMRTAEHMEFLRSVNLLK 273
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 508 LQEIHHIELAQISDFLKREFFSTGTAVVRQGDRGDKFYIIRGG 636
L+++ L +I+D ++ F+ G ++RQG RGD F+II+ G
Sbjct: 272 LKDLAESYLLKIADVIEETFYEEGEYIIRQGARGDTFFIIKSG 314
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 111 SAEQIRKAIMMNDFLRNLMDDERLNAVVGAMMTQDFEAGSLIIREGE 251
S E I++AI+ NDFL+NL + ++ VV M + F+ II+E E
Sbjct: 140 SKELIKEAILDNDFLKNL-EASQVREVVECMCERMFKRDEYIIKEKE 185
>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
Length = 373
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +2
Query: 314 VKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIMVRSERQEQEDNIRFL 493
V F +FGELA+++ + R A+I TE +W L+R F +++V ++ +E NI L
Sbjct: 183 VHTFNGTGMFGELALMHNSLRNATIVAKTEGTLWALDRSTFVQVVVGGAQRRRERNIELL 242
Query: 494 SSVPLCKK 517
SV + K+
Sbjct: 243 KSVSILKE 250
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 511 QEIHHIELAQISDFLKREFFSTGTAVVRQGDRGDKFYIIRGGE 639
++ H +L I D + + S +++ GD GD FY+I GE
Sbjct: 125 EKFHREDLDVILDSMFEKKVSPEEIIIKVGDEGDNFYVINTGE 167
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 105 ERSAEQIRKAIMMNDFLRNLMDDERLNAVVGAMMTQDFEAGSLIIREGESEVICLFRLQ 281
+R E+ + + L+ L DE L+ V A+ ++F+ G +IREG C++ ++
Sbjct: 232 QRRRERNIELLKSVSILKELKPDE-LDKVSDALYPKEFKDGEAVIREGNESAYCMYFIE 289
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 508 LQEIHHIELAQISDFLKREFFSTGTAVVRQGDRGDK-FYIIRGGEVVVT 651
L+E+ EL ++SD L + F G AV+R+G+ Y I G+V VT
Sbjct: 248 LKELKPDELDKVSDALYPKEFKDGEAVIREGNESAYCMYFIEKGKVRVT 296
>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
Length = 370
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/66 (30%), Positives = 41/66 (62%)
Frame = +2
Query: 311 VVKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIMVRSERQEQEDNIRF 490
+V G G FGELA++Y R A+I+ T+ ++W ++R +++I++ S+ +++ +F
Sbjct: 179 LVSTIGEGGSFGELALIYGTPRAATIKAKTDVKLWAIDRVTYRRILMGSQIRKRRMYEQF 238
Query: 491 LSSVPL 508
L V +
Sbjct: 239 LEKVSI 244
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 508 LQEIHHIELAQISDFLKREFFSTGTAVVRQGDRGDKFYIIRGGEVVV 648
L+ + E ++D L+ F G VV QG+ GD+F+II G VV
Sbjct: 245 LESLDKWERLTVADALEPTQFQDGDDVVVQGEHGDEFFIIVEGTAVV 291
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 314 VKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIM 448
V GP + FGE+A++ R A+++ + L+R+ F++++
Sbjct: 304 VSRLGPSDYFGEIALVLNRPRAATVQARGTLKCVKLDRQRFERVL 348
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +3
Query: 9 KQRRKRGIIAPHPTFDAARSLTDLQYDVFEKDERSAEQIRKAIMMNDFLRNLMDDERLNA 188
K+ +++ + T S T + + F KD RS + I+ AI NDFL+NL + ++
Sbjct: 439 KKEKRQAVSGESSTKAQEESRTGKELERFPKDFRSKQLIKDAIFENDFLKNL-EAAQVRK 497
Query: 189 VVGAMMTQDFEAGSLIIREGES 254
+V M + F+ +II+EG++
Sbjct: 498 IVDCMYSNTFQRNDVIIQEGDA 519
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 263 LFVSASGQFEALKSGQVVKNFGPGEVFGELAILYKAKRFASI 388
L+ A G+ + + +V+ G VFGELAILY +R A++
Sbjct: 523 LYAIADGRLQVTRENKVLGEMVAGMVFGELAILYNCRRTATV 564
>SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23)
Length = 279
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 281 GQFEALKSGQVVKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIM 448
GQ L V+ GPG FGE+ ++Y RFA+++ T ++ L + +++
Sbjct: 169 GQVNILCEDNVIGTLGPGSFFGEIGLIYGESRFATVQAKTYCQILMLTKHDLDEVL 224
>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
Length = 380
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 GQFEALKS-GQVVKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIM 448
GQ L +VV GPG FGE+ ++ R +++C T + L + K++
Sbjct: 127 GQVNILNDEDEVVGTLGPGSFFGEIGLVCGESRVYTVQCKTYCQTLMLTKHDMDKVL 183
>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
Length = 858
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 553 LKREFFSTGTAVVRQGDRGDKFYIIRGGEV 642
LK E F G + R G RGDK Y I+ G V
Sbjct: 640 LKFEVFLNGDYICRSGHRGDKMYFIQKGIV 669
>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
Length = 498
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 329 PGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIM 448
PGE GE+A++ F S + I + V + + +F IM
Sbjct: 376 PGEFLGEMAVITGEPSFFSAKAINQCHVAIITKTIFYSIM 415
>SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26)
Length = 692
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 311 VVKNFGPGEVFGELAILYKAKRFASIRCITEARVWTLERRVFQKIM 448
V++ F GE FGE+++LY A++R ++A + L Q I+
Sbjct: 287 VIRAFTEGECFGEVSVLYDIPCIANVRVPSQASLILLRAADVQGIL 332
>SB_32411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 369 ALYKIASSPKTSPGPKFLTTWPLFNASNCP 280
A Y ++P T+P P LT+ P SNCP
Sbjct: 9 APYNSPTTPMTTPIPSLLTSGPHLCPSNCP 38
>SB_58075| Best HMM Match : SRCR (HMM E-Value=5e-33)
Length = 204
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 546 RFLKKRILLHRYSGGQTRRSWR*VLHYS-RWGSCC 647
R +K L R +GG++RR R ++YS RWG+ C
Sbjct: 41 RRIKPVRLRVRLAGGKSRREGRVEVYYSRRWGTIC 75
>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
Length = 581
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 532 LAQISDFLKREFFSTGTAVVRQGDRGDKFYIIRGG 636
L +I L+ + FS G + R+GD G + YI+ G
Sbjct: 463 LREIVVKLRSQVFSPGDYICRKGDVGREMYIVNSG 497
>SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 553 LKREFFSTGTAVVRQGDRGDKFYIIRGGEVVV 648
L+ + FS G V R+G+ G + YI+ G++ V
Sbjct: 396 LRSQLFSPGDYVCRKGEVGREMYIVNRGKLEV 427
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 553 LKREFFSTGTAVVRQGDRGDKFYIIRGGEVVVT 651
L+ + F+ V+R+G +FY I G V VT
Sbjct: 562 LRYDSFARSRVVIRKGHVAQRFYFIYSGSVCVT 594
>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 529 ELAQISDFLKREFFSTGTAVVRQGDRGDKFYII 627
+L ++ D + G ++ QGD GD FY+I
Sbjct: 151 QLNEVLDAMFERKTQAGDHIIDQGDDGDNFYVI 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,656,042
Number of Sequences: 59808
Number of extensions: 410855
Number of successful extensions: 1108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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