Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0579
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel...    32   0.38 
At1g47300.1 68414.m05237 F-box family protein similar to hypothe...    31   0.88 
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    30   1.2  
At4g05300.1 68417.m00803 hypothetical protein                          29   2.0  
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel...    29   2.0  
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family...    28   6.2  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   8.2  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    27   8.2  

>At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel,
           putative (CNGC11) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc3) GI:4581201 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 LRNLMDDERLNAVVGAMMTQDFEAGSLIIREGESEVICLFRLQDNL 290
           L   MDD+ L+A+   + T  +   S I+REGE     LF ++ NL
Sbjct: 402 LLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNL 447


>At1g47300.1 68414.m05237 F-box family protein similar to
           hypothetical protein GB:AAD22295 GI:4544385 from
           [Arabidopsis thaliana]
          Length = 306

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 443 FFERLFSLMSTPSPRLYIVLKRI-VWLYIRLPVHQ 342
           +F  LF   S+  PRL   +KR  +W +  LP HQ
Sbjct: 41  YFTELFLTSSSTQPRLLFAIKRNGLWCFFSLPKHQ 75


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 165 MDDERLNAVVGAMMTQDFEAGSLIIREGESEVICLFRLQDNLK 293
           MDD+ L+A+ G +++    AG+ I REG+     LF ++  ++
Sbjct: 453 MDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIE 495


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 525 MVYFLQSGTEERKRILSSCSWRSLRTMIF*KTLLSNVHTLASVIHRIEANRLALYKIASS 346
           M +  Q  TE  +R     SWR LR      TL     TL + +H I  N L ++ +  +
Sbjct: 159 MYHISQLHTENARRW--ERSWRCLRVRTLYSTLNLVYRTLGNCVHNISIN-LIVFDVEGT 215

Query: 345 PKTSPG 328
              +PG
Sbjct: 216 KTNTPG 221


>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC3) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           GI:4581201 from [Arabidopsis thaliana]
          Length = 706

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 MDDERLNAVVGAMMTQDFEAGSLIIREGESEVICLFRLQDNL 290
           MDD  L+A+   + T  +   S I+REGE     LF ++ NL
Sbjct: 481 MDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNL 522


>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
           protein identical to cDNA nematode responsive protein
           GI:2213418
          Length = 695

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 424 EKSLSKNHGSK*TPGTGRQYSFSFFCAALQEIHHIELAQISD 549
           E    + HGS       R+YS S  CA+LQ+I+      +SD
Sbjct: 263 ENHSQEGHGSPEDIDNDREYSKSRACASLQQINEEASDDVSD 304


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
 Frame = +3

Query: 60  ARSLTDLQYDVFEKDERSAEQIRKAIMMNDFLRNLMDDERLNAVVGAMMTQDFEAGSL-- 233
           AR + +L++ + E+DE  A       +  + L  +  +    +   +M   +FE+ S   
Sbjct: 181 AREIEELKHKLRERDEERAALQSSLTLKEEELEKMRQEIANRSKEVSMAISEFESKSQLL 240

Query: 234 -----IIREGESEVICLFR-LQDNLKR*KVAKSLRTLDQAK 338
                +++  E E+  L R L++  +  +++K+ + L+Q K
Sbjct: 241 SKANEVVKRQEGEIYALQRALEEKEEELEISKATKKLEQEK 281


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
 Frame = +3

Query: 72  TDLQYDVFEKDE-RSAEQI--RKAIMMNDFLRNLMDDERLNAVVGAMMTQD-FEAGSLII 239
           +D +YD  + DE R  E I  +K     + L+ L   E L+     M   D FE     +
Sbjct: 146 SDSEYDEIDLDEERKKEDIFNKKFQRHKELLQTLTKSETLDEAFRWMNKLDKFEEKHFKL 205

Query: 240 REGESEVICLFRLQDNLKR*KVAKSL---RTLDQAKFLVNWQSYIKPNDSLQYDV*PR-- 404
           R    E   +  L + LK  +  +     + L++A  LV W+    PN+   Y V  R  
Sbjct: 206 RP---EYRVIGELMNRLKVAEGKEKFVLQQKLNRAMRLVEWKEAFDPNNPANYGVIERDN 262

Query: 405 -RGCGH*REE 431
            +G G  REE
Sbjct: 263 VQGGGEEREE 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,936
Number of Sequences: 28952
Number of extensions: 297080
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)