Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0578
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   3.4  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   4.5  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    26   4.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.9  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 314  IELKCCQLINTNYSLWHIKYAFIIK*IHRLYICV-LLLFKRFLSVLFKKNVYVC 156
            +EL   QL  +N     +   F++  +  L IC+ +     FLS ++KK  YVC
Sbjct: 989  VELPEWQLEKSNTKNVLVTSIFLLSSLQYLGICIGINQSSEFLSPIWKKKTYVC 1042


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 303 FKFYYLCSVKTFVHRLYIFLFCLF 374
           F+FY L ++   V+ L IFLF LF
Sbjct: 57  FRFYGLNTIGKIVYILQIFLFSLF 80


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 203 FKRFL---SVLFKKNVYVCYYVYFFPSNCDETWHSSLWNSS 90
           F RFL   S LF  N  +  ++Y+FPSN    +  +   SS
Sbjct: 272 FFRFLCLASPLFTMNFPMAIFMYWFPSNVFSVFQGAFLRSS 312


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 543 DPYVKKQNNIL*SYCNSYDFLIYNLNTYCVQNNCIYV 433
           D Y++   +I  SY    ++L+Y ++TY  ++ C Y+
Sbjct: 347 DGYLEWLKHIRYSYTLRRNYLLYAMDTYLPKSVCSYI 383


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 561  CTFIRLDPYVKKQN 520
            C F+ LDP++KK+N
Sbjct: 1149 CPFVVLDPFLKKKN 1162


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 408  LYEREKKRIHICNYFGHSMYLSYILK 485
            L E++KKR+ IC++  + +YL Y LK
Sbjct: 1552 LAEQDKKRVWICSFRTNEIYL-YGLK 1576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,402
Number of Sequences: 5004
Number of extensions: 51652
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)