Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0578
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012...    34   0.093
03_04_0142 - 17656751-17657554                                         31   0.86 
11_06_0614 - 25530782-25531018,25532053-25532235                       30   1.5  
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712...    28   6.1  
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686...    27   8.0  

>03_06_0243 +
           32598782-32598793,32599037-32599123,32601052-32601257,
           32601342-32601453,32601628-32601724,32601815-32601924,
           32601996-32602153,32602559-32602697,32602776-32602892,
           32603084-32603140,32603280-32603351,32603617-32603736,
           32603818-32603983,32604067-32604188,32604373-32604447,
           32604636-32604775,32604860-32604922,32605002-32605065,
           32605161-32605296,32605401-32605474,32605570-32605664,
           32605761-32605792,32606344-32606474,32606595-32606827,
           32606916-32607723,32607815-32607967
          Length = 1192

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 341 SQIVYFSFLFICLKTLFNMTVTIV*ERKKTDTYMQLFWTQYVFKL 475
           SQ++Y SFL  C   LF   +  V +     T +Q FW +Y ++L
Sbjct: 241 SQLMYLSFLCFCYNYLFVYMLFPVDDNGTRKTVVQYFWDRYNYRL 285


>03_04_0142 - 17656751-17657554
          Length = 267

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 175 KKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIVPSTLICLVLALDECTSAYGA 11
           K +S  V ++  F L+ + L IVLY  PA+ +V++   LI ++ AL      Y A
Sbjct: 200 KSLSFLVHLTAKFPLVFIFLLIVLYAIPASAAVLLLYILITVLFALPSFLILYFA 254


>11_06_0614 - 25530782-25531018,25532053-25532235
          Length = 139

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 167 VYVCYYVYFFPSNCDETWHSSL 102
           +Y  +YV++  + C+E WH++L
Sbjct: 70  LYYVFYVFYMMATCEEWWHAAL 91


>11_06_0152 +
           20669949-20670326,20670887-20670997,20671079-20671280,
           20671393-20671675,20672145-20672234,20672366-20672473,
           20672595-20672975,20673250-20673324,20673685-20673797,
           20676233-20676742,20676807-20677300
          Length = 914

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 181 YLKKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIVPSTL-ICLVLALDECTSAYGA 11
           Y+   S+  +      +I   L I+++  P+NV  +VP  L +C+     + TS  GA
Sbjct: 329 YVAPTSLIFVQKKLVVIIVPNLVILVWDVPSNVGKLVPRQLQLCVTNVARKATSHVGA 386


>02_02_0701 -
           13067547-13067580,13067725-13067864,13068525-13068659,
           13068761-13068808,13068834-13068859,13068990-13069057,
           13069101-13069112,13070359-13070415,13070817-13070935,
           13071700-13071810,13076755-13077066
          Length = 353

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 235 YIDYIYVCCF-YSRGFFQCYLKKMSMSVIM 149
           +I +IY CCF   R  F C   +M  S+++
Sbjct: 182 FISWIYFCCFNLGRKHFVCIFDRMDSSLML 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,641
Number of Sequences: 37544
Number of extensions: 245284
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)