Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0578
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)                     31   0.51 
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        31   0.67 
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              27   8.2  

>SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)
          Length = 349

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 191 LSVLFKKNVYVCYYVYFFP-SNCDETWHSSLWNSSE 87
           L +L KK+  + Y+   FP S+ D+TW SS W+  E
Sbjct: 223 LYMLLKKDTALNYHEDIFPKSDSDQTWESSPWDLGE 258


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 468 NTYCVQNNCIYVSVFFLSHTIVTVILNNVFRQINKKEKYTICEQK 334
           N++C+Q  C+Y+  ++L+H  VTV      R  +  ++    E++
Sbjct: 410 NSHCLQTTCLYLVYYWLTHKHVTVSARMAARDSDDSDEEAADEEE 454


>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 175 LNNTERNLLNKSNTHIYSLCIYLI 246
           +NNT+R++ NK N+   +LC Y++
Sbjct: 474 INNTQRSVSNKLNSGATALCDYML 497


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 348 LYIFLFCLFV*RHYLI*Q*QLYEREKKRIHICN-YFGHSMYLSYILKSHNYCNKIIKCCF 524
           L IF+ CLF      I    L  R +K + + + + GH  + +  L   +YCN       
Sbjct: 105 LQIFISCLFFVAISWIITKLLSWRNRKELRVADPHKGHHWFFTEFLDKPSYCNACENALV 164

Query: 525 VSLHMD 542
             LH +
Sbjct: 165 RGLHCE 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,868
Number of Sequences: 59808
Number of extensions: 340336
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)