Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0578
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical...    28   4.1  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    28   5.4  
U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    27   9.5  
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      27   9.5  

>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 215 VLLLFKRFLSVLFKKNV-YVCYYVY---FFPSNCDETWHSSLWNSSECVCHSTINTNMSS 48
           + L F   L + F  ++ Y+   V+   +FP++  +   S  WNS + + H   N NMS 
Sbjct: 11  IFLAFLAILCLFFALSIGYISAVVFLSTWFPTHLQK--FSRTWNSEDPLNHQNANVNMSP 68

Query: 47  FG 42
           +G
Sbjct: 69  WG 70


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 287 NTNYSLWHIKYAFIIK*IHRLYICVLLLFKRFLSVLFKKNVYVCYYVYF 141
           N NY ++++ Y  ++      Y  V+L+   +    F KN+ +C+  YF
Sbjct: 25  NMNYLIFNVVYLLLL--FISAYFTVILVMTSWRIRKFHKNMTICFSFYF 71


>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 441 IYVSVFFLSHTIVTVILNNVFRQINKKEKYTICEQKFLHYINNRT*MLPINKYKLLFMAY 262
           +Y   F  S + ++  LN ++R ++       C   +LHYI +   +L I    L F+ +
Sbjct: 99  LYCGCFIASSSFLS--LNFIYRYVSS------CHSHYLHYIQDFGLILIIAYCILPFVIW 150

Query: 261 QICIY 247
            IC+Y
Sbjct: 151 SICVY 155


>AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.13 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -1

Query: 154 IMSIFFHLIAMKLGIVLYGT---PANVSVIVPSTLICLVL 44
           I ++F HL  M    +LYG+   PA++ V++ + +ICL L
Sbjct: 141 IQTVFLHLRTMVR--LLYGSKHMPASIDVLINANMICLFL 178


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 489 DFLIYNLNTYCVQNNCIYVSVFFLSHTIVTVILNNVFRQINKKEKYTICE 340
           + +I+NL  +C ++     +VF  S  I  + L+  F+ +NK+ K  IC+
Sbjct: 463 EIIIHNLG-HCDKHLPCICTVFINSQDICNLKLHAYFQFLNKRVKINICK 511


>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 465 TYCVQNNCI-YVSVFFLSHTIVTVILNNVFRQI 370
           TY    NCI Y S+F L   + TV+LN  +  I
Sbjct: 107 TYLDHKNCIGYTSIFDLVFKLATVLLNETWLMI 139


>U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical
           protein C04E6.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 483 LIYNLNTYCVQNNCIYVSVFFLSHTIVTVILNNVFRQINKKEKYTICEQKFLHYINNR 310
           + Y+ N YC        +  F   T   ++ + +  QIN K+    C++K   Y N R
Sbjct: 184 IAYSNNGYCFNYFAYGSNDLFTQPTKFLMVKDKLLEQINAKKALYTCDKKTEAYCNYR 241


>AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical
           protein Y75B12B.10 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 465 TYCVQNNCI-YVSVFFLSHTIVTVILNNVFRQI 370
           TY    NCI Y S+F L   + TV+LN  +  I
Sbjct: 82  TYLDHKNCIGYTSIFDLVFKLATVLLNETWLMI 114


>Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical
           protein T13F3.9 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 543 DPYVKKQNNIL*SYCNSYDFLIYNLNTYCVQNNCIYV 433
           + YVK+  N+   +CN Y  +I  +   C+   C +V
Sbjct: 147 EEYVKQATNLRPEFCNDYQRMIIAIFMLCLFFICFFV 183


>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 KFYYLCSVKTFVHRLYIFLFCLFV*RHY 389
           KF ++C +   ++ L  FL C F+  HY
Sbjct: 295 KFQFICDILPLLNGLIHFLSCFFMSSHY 322


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 492 YDFL-IYNLNTYCVQNNCIYVSVFFLSHTIVTVILNNVFRQINKKE 358
           Y+F+  Y L+ + +  + I + +F+L+H +   +  +VF+  +KKE
Sbjct: 485 YNFVQYYMLDAFAIIFS-ILIIIFYLAHLLFKFVYKHVFKTKSKKE 529


>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/54 (16%), Positives = 29/54 (53%)
 Frame = -1

Query: 232 IDYIYVCCFYSRGFFQCYLKKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIV 71
           I+Y+  C  ++  + + +   ++ + +  + +H++ +  G+ + GT   ++V V
Sbjct: 760 IEYVLGCVSHTASYLRLWALSLAHAQLSEVLWHMVFVTGGLGISGTAGFIAVYV 813


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/54 (16%), Positives = 29/54 (53%)
 Frame = -1

Query: 232 IDYIYVCCFYSRGFFQCYLKKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIV 71
           I+Y+  C  ++  + + +   ++ + +  + +H++ +  G+ + GT   ++V V
Sbjct: 760 IEYVLGCVSHTASYLRLWALSLAHAQLSEVLWHMVFVTGGLGISGTAGFIAVYV 813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,408
Number of Sequences: 27780
Number of extensions: 286412
Number of successful extensions: 854
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)