Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0578
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    29   2.2  
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di...    29   2.2  
At3g29270.2 68416.m03675 expressed protein                             29   2.2  
At3g29270.1 68416.m03674 expressed protein                             29   2.2  
At5g45095.1 68418.m05532 expressed protein                             27   6.7  
At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase, puta...    27   6.7  

>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 483 LIYNLNTYCVQNNCIYVSVFFLSHTIVTVILNNVFRQINKKE 358
           LIY ++ YC+++N       FLSH  V+  L  V+ ++N+ E
Sbjct: 337 LIYAIHGYCLKSN-------FLSHASVSTALTTVYSKLNEIE 371


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 269 WHIKYAFIIK*IHRLYICVLLLFKRFLSV-LFKKNVYVCYYVYFF 138
           W I YA+ +  I  LY+  L++F   + +  F+ N Y   +V++F
Sbjct: 385 WMISYAYFLT-ISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYF 428


>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
           Dictyostelium discoideum, U66526
          Length = 900

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 269 WHIKYAFIIK*IHRLYICVLLLFKRFLSV-LFKKNVYVCYYVYFF 138
           W I YA+ +  I  LYI  L++F   + +  F+ N Y   ++++F
Sbjct: 356 WMISYAYFLA-ISTLYIVCLMIFGSAIGLKFFRFNDYTIQFMFYF 399


>At3g29270.2 68416.m03675 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 175 KKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIVPSTLICLVLALDECTSAYGA 11
           K +   V ++  F L+ + L I+LY  P + +++    L+ L+LAL      Y A
Sbjct: 196 KSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPSFLILYFA 250


>At3g29270.1 68416.m03674 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 175 KKMSMSVIMSIFFHLIAMKLGIVLYGTPANVSVIVPSTLICLVLALDECTSAYGA 11
           K +   V ++  F L+ + L I+LY  P + +++    L+ L+LAL      Y A
Sbjct: 196 KSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPSFLILYFA 250


>At5g45095.1 68418.m05532 expressed protein 
          Length = 394

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 285 YKLLFMAYQICIYNQINT*TIYMCVAFIQEVSFSVI 178
           +K+LF +  + + +  +   IY+C AF+  +SF V+
Sbjct: 342 FKMLFSSCLLALLDLRSYYRIYLCFAFLNALSFDVL 377


>At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 269

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 289 INWQHLSSIIYVV*KLLFTDCIFFFFVYLSEDII*YDSDNCMREKKNG 432
           I W    ++ +++  L + +C   F +Y+ +D    D+   +R+KK G
Sbjct: 181 IKWDKGKALEFLLESLGYDNCTDVFPIYIGDDRTDEDAFKILRDKKQG 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,387
Number of Sequences: 28952
Number of extensions: 231551
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)