Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0577
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.37 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   3.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 28  PCTRPST--HY*SFICQHSCDCFVQHRLPTKICGHCYPM 138
           P T P T  H    I Q SC   +Q  L  KI  H YP+
Sbjct: 128 PPTLPVTSIHLRGAIGQRSCQVVIQCYLEIKIDEHLYPV 166


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 439 QKQELQRVQQAGRYLQPMKPLAPVFHSS 356
           Q+Q    +  A   L+P   L+P+FHS+
Sbjct: 94  QQQAGANMAAAANLLRPHPYLSPLFHSA 121


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 88  SNHRNVDI*SFSNGLMVLC 32
           S  RN++  SF   L++LC
Sbjct: 268 SKSRNIEGVSFGTNLVILC 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,517
Number of Sequences: 336
Number of extensions: 3049
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)