Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0577
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   111   6e-26
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   108   7e-25
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   4e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   0.92 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   3.7  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   3.7  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   6.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  111 bits (268), Expect = 6e-26
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +2

Query: 8   RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
           RL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181

Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
           REVLR+RG L R   WDV+ DL
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDL 203



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 256 FYRDPEESEKDEQQAK 303
           FYRDPEE E++E+  K
Sbjct: 205 FYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  108 bits (259), Expect = 7e-25
 Identities = 53/82 (64%), Positives = 61/82 (74%)
 Frame = +2

Query: 8   RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
           RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182

Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
           REVLRLRG + R   W+V+ DL
Sbjct: 183 REVLRLRGNISRTTAWEVMPDL 204



 Score = 28.3 bits (60), Expect = 0.92
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 256 FYRDPEESEKDEQQ 297
           FYRDPEE E++E+Q
Sbjct: 206 FYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 11  LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 190
           L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 53  TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 163
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 161 IGLMWWLLAREVLRLRGVLPRDQRWD 238
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 255 DKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 157
           ++S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -2

Query: 529 GAAVAAAVRRQLCSTHLVPGQTILLEQG-VLQKQE---LQRVQQAGRYLQPMK 383
           G ++   +  Q    H+VPG+  +LE   V+ +QE    Q  ++    LQP+K
Sbjct: 171 GGSIIIKLINQHIDIHIVPGRPTVLENAKVINEQEGITGQSFERGDAQLQPVK 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,830
Number of Sequences: 5004
Number of extensions: 46383
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)