Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0577
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 109 2e-24
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 109 2e-24
04_03_0663 - 18487295-18487795 32 0.41
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.2
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 29 2.9
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 29 2.9
06_03_0543 + 21967787-21970261 29 3.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 5.0
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 5.0
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 5.0
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909... 28 5.0
09_04_0240 + 15958110-15958305,15959586-15960763 28 6.6
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 6.6
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 8.7
01_05_0535 - 23001864-23005052 27 8.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 109 bits (261), Expect = 2e-24
Identities = 48/82 (58%), Positives = 61/82 (74%)
Frame = +2
Query: 8 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLA
Sbjct: 124 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLA 183
Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
R VL++RG + +WDV+VDL
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDL 205
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 109 bits (261), Expect = 2e-24
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +2
Query: 8 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLA
Sbjct: 124 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLA 183
Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
R VL++RG + +WDV+VDL
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDL 205
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 256 FYRDPEESEKDEQQAKEQ 309
FYRDPEE+++ E++A Q
Sbjct: 207 FYRDPEEAKEQEEEAPAQ 224
>04_03_0663 - 18487295-18487795
Length = 166
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 526 AAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQAG 404
+A+AAAV T + P QT + +Q QKQ QR+Q+ G
Sbjct: 50 SALAAAVPASKPPTQIKPNQTKIKQQEENQKQSSQRIQKLG 90
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 417 TRCSSCFWSTPCSRRMVCPGTR*VEHN 497
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 417 TRCSSCFWSTPCSRRMVCPGTR 482
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +2
Query: 143 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD----LSSTVTLKKVKRMNNKPRNR 310
T S S+ +W LA E+L Q WDV +D L + K N+ +NR
Sbjct: 158 TNSERSLSALWGKLAAEILM--------QNWDVALDELNRLKEIIDSKNFSSPLNQLQNR 209
Query: 311 LW 316
+W
Sbjct: 210 IW 211
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 535 HEGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQE 428
H+G +A A LC+ ++VPG+++ E+ + + E
Sbjct: 78 HDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 113
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 167 LMWWLLAREVLRLRGVLPRDQRWDVVVDLSSTVTLKKVKRMNNKPRNRL 313
L W++L RE +LRGV P + ++++ + T +++ K ++ L
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYRELVLATRKFKDEL 520
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 417 TRCSSCFWSTPCSRRMVCPGTR*VEHN 497
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 597 CNIINQCRVFMQHSSLERIHPTRALRWRRLCGGS 496
C +I +C ++ +S R R+ RWRR GG+
Sbjct: 1248 CAMIEECNDDVEEASRRRSSRRRSGRWRRRVGGT 1281
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 271 QGHGRRQINHNIPALVTGKHTTKPQHFTCQQP-PHQTNRV 155
+GHG+R H + V H + Q T Q P PH+ N V
Sbjct: 193 EGHGQRAPPHLVRLHVPQSHPSDAQCLTAQPPDPHRRNVV 232
>02_05_1258 +
35290183-35290198,35290292-35290599,35290844-35290939,
35291067-35291144,35291224-35291400,35292738-35292806,
35292917-35293093
Length = 306
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 535 HEGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQE 428
H G +A A LC+ ++VPG+++ E+ + + E
Sbjct: 75 HNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 110
>09_04_0240 + 15958110-15958305,15959586-15960763
Length = 457
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 STPCSRRMVCPGTR*V-EHNCRRTAAATAAPSWGGSA 548
S PC R +V T V RR AAA +WGG A
Sbjct: 301 SLPCRRALVSVATEDVLRDRGRRYAAALRGGAWGGEA 337
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 265 HGRRQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 152
+ + Q NIP LVT TTK + F PPH +G
Sbjct: 463 NNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 184 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 86
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 116 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLSSTV-TLKKV---- 280
FV + C+ GL ++ E++ G+LPR + + V+DL L K+
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847
Query: 281 KRMNNKPRNRLW 316
KRM KP +W
Sbjct: 848 KRMPMKPNTLIW 859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,424
Number of Sequences: 37544
Number of extensions: 344318
Number of successful extensions: 1101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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