Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0577
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 133 1e-31
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.019
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 0.96
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.7
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 29 2.2
SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06) 29 2.9
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 28 6.7
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 6.7
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 27 8.9
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 133 bits (321), Expect = 1e-31
Identities = 60/82 (73%), Positives = 68/82 (82%)
Frame = +2
Query: 8 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
RLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLA
Sbjct: 120 RLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLA 179
Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
REVLR+RG + R W+++ DL
Sbjct: 180 REVLRMRGSISRALPWEIMPDL 201
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 256 FYRDPEESEKDEQQA 300
FYRDPEE+EK+EQ A
Sbjct: 203 FYRDPEEAEKEEQAA 217
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 252 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 85
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 84 ITGMLTY 64
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +2
Query: 95 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLSSTVTLK 274
N + + V+I I N + H++G + + LRL+ ++ + + +DL + VT +
Sbjct: 1921 NISAAIAIVEIPIVANI-TFHNLGKFRKIYQLDKLRLQTIISSHSNYMITIDLGNNVTYR 1979
Query: 275 KVKRMN 292
VK+++
Sbjct: 1980 DVKKLD 1985
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 23 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 118
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 7 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 135
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 155 HSIGLMWWLLAREVLRLRGVLP 220
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +2
Query: 101 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLSSTVTLKKV 280
+SPL + I +PCNT +S+ W+LLA + ++ VL D R VD T K +
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR---AVDYVKPPTQKAM 546
Query: 281 KRM 289
+M
Sbjct: 547 NKM 549
>SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)
Length = 348
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 259 RRQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNVHKS*WGVC 98
+RQ++H I L+ K+ K F +P QT V R A+++ + K+ G+C
Sbjct: 257 KRQLSHQIQQLINEKNKRKESKFV--KPKQQTPEVPRSTPAYEAQM-KNAKGIC 307
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = -3
Query: 252 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLV---LHGIAMSTNLSGESVLHKAI 82
+ +T R+ STP ++ +I+P +W D+ + ++ L+ E + +
Sbjct: 168 RRSTVKYRFGDASTPLYQDLKDKSSRNIRPWQWHDMTSRYQYAQSLINQLADERLYEFTL 227
Query: 81 TG----MLTYEASVMG*WSCAGSNTIKRRV 4
TG ++ ++ASV+ W N KRRV
Sbjct: 228 TGQFEDVVGHDASVL--WKTVSLNG-KRRV 254
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 255 DKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVLHKA 85
++ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 6 NRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKYEFT 65
Query: 84 ITG 76
+TG
Sbjct: 66 LTG 68
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -3
Query: 231 RWSRGSTPRSLSTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 91
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 11 LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 148
+++ +D A H P + +Y NI +I L NT S + +D I N K
Sbjct: 260 IMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,571
Number of Sequences: 59808
Number of extensions: 389464
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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