Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0577
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.58 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.58 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 243 TTSQRWSRGSTPRSLSTSRANNHHIKP 163
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 248 DLSSTVTLKKVKRMNNKPRNRLWYQLNQK*LLLSMK 355
           DLS     +K   ++ + RNR  Y   QK L + MK
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMK 176


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 243 TTSQRWSRGSTPRSLSTSRANNHHIKP 163
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 248 DLSSTVTLKKVKRMNNKPRNRLWYQLNQK*LLLSMK 355
           DLS     +K   ++ + RNR  Y   QK L + MK
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMK 176


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 563 CINTLHWLIILHES 604
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 563 CINTLHWLIILHES 604
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 492 HNCRRTAAATAA 527
           +NC+RTA  TAA
Sbjct: 172 YNCKRTATITAA 183


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 20  VLDPAQDHQPITEASYVNIPVIALCNTDSP 109
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 277 SEKDEQQAKEQXXXXXXXXXXXXXHEDWNETLEPVASW 390
           +++ +QQ ++Q              + W    EP ASW
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 130 YPMQHQVFPLYWFDVVVV 183
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 130 YPMQHQVFPLYWFDVVVV 183
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,033
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)