Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0577
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   117   5e-27
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   112   2e-25
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   111   5e-25
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   0.78 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    31   0.78 
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   3.2  
At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof...    28   4.2  
At3g63180.1 68416.m07097 expressed protein                             27   7.3  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   7.3  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    27   9.6  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  117 bits (282), Expect = 5e-27
 Identities = 51/82 (62%), Positives = 63/82 (76%)
 Frame = +2

Query: 8   RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
           RLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLA
Sbjct: 124 RLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLA 183

Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
           R VL++RG +   Q+WDV+VDL
Sbjct: 184 RMVLQMRGTIAAGQKWDVMVDL 205


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  112 bits (269), Expect = 2e-25
 Identities = 50/82 (60%), Positives = 61/82 (74%)
 Frame = +2

Query: 8   RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
           RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA
Sbjct: 125 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184

Query: 188 REVLRLRGVLPRDQRWDVVVDL 253
           R VL++RG +   Q+WDV+VDL
Sbjct: 185 RMVLQMRGTILAAQKWDVMVDL 206


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  111 bits (266), Expect = 5e-25
 Identities = 49/86 (56%), Positives = 63/86 (73%)
 Frame = +2

Query: 8   RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 187
           RLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA
Sbjct: 125 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184

Query: 188 REVLRLRGVLPRDQRWDVVVDLSSTV 265
           R VL++RG +   Q+WDV+V+  +T+
Sbjct: 185 RMVLQMRGTILAAQKWDVMVNSRNTI 210


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 284 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 397
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 154
           ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 101 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 238
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
           PF04784: Protein of unknown function, DUF547, weak hit
           to PF00462: Glutaredoxin
          Length = 587

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = -3

Query: 603 LSCNIINQCRVFMQHSSLER------IHPTRALRWRRLCGGSCAPLILY 475
           L C     CR+F+    L        I+PTR +   ++ GG   P++ +
Sbjct: 232 LGCEECRGCRLFLHEKRLRYVEINIDIYPTRKVELEKISGGDVVPMVFF 280


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 532 EGAAVAAAVRR-QLCSTHLVPGQTILLEQGVLQKQELQRVQQAGRYLQ--PMKPLAPVFH 362
           +GA ++A+  R + C+TH    + I L Q  L+   L    +   YL+   ++P A   +
Sbjct: 424 QGAPISASQPRPKRCATHFFIARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAG--N 481

Query: 361 SSLHG 347
            SLHG
Sbjct: 482 PSLHG 486


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 160 RVGRLGVAWDSNVHKS 113
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 216 STPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGM 73
           +T RS STSR ++    P+ + D  +HG  ++      + L   ++ M
Sbjct: 829 NTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRM 876


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,794
Number of Sequences: 28952
Number of extensions: 257267
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)