Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0576
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.84 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.84 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.6  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   5.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.8  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
            Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -2

Query: 506  ATRLGVSA-TVGVKVTMSNAVKNTEKT-TVGVDCLHISSCVTVQGLVVTTPPGPSWIQ-- 339
            AT +G +A TV V +   + V  T  + +VG      +   T  G VV   P PSW+   
Sbjct: 808  ATPVGTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTET 867

Query: 338  -TGNPVGSATSLSSSV 294
             T   VG  T++++ +
Sbjct: 868  VTSGSVGFTTTIATPI 883



 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 440 TEKTTVGVDCLHISSCVTVQGLVVTTPPGPSWIQ---TGNPVGSATSLSSSV 294
           T   +VG      +   +V G V+   P PSWI    T   VG  T++++ +
Sbjct: 652 TTSGSVGFTTTLATQSGSVPGTVLVDVPTPSWITETVTSGSVGFTTTIATPI 703


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = -2

Query: 494 GVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSWIQTGNPVGSA 315
           G S+++   +T +    +T  T++ +     SS  T    + TT    +   +  P G +
Sbjct: 125 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGS 184

Query: 314 TSLSSSVTDNVRAQAEANQVTRPQLP-PPLLMSQTKKLPRNCPTLGTPLT 168
           +SLS+ +T  V         +   +P PP   S T       PT  T  T
Sbjct: 185 SSLSTPITPTV----PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -3

Query: 562 TNSGGVQFVGSTVRAGTNLQPGWG-FLPPLG*K-SP*AMRSKIPRRPPSVWIAST*APAL 389
           TN+ GV    +++    N+ P +  F+P +G   +P    + +    P  + AS      
Sbjct: 111 TNNAGVHMTNASMNP--NVNPSYPVFIPQVGMSVAPPVATAAVSMSYPHHYSASVQQQQA 168

Query: 388 RFRAWLLPPHLGPAGSKPVTLLGLPPA 308
            F +   P +L PA ++P T+ G+P A
Sbjct: 169 TFVSNGQPHNL-PAQAQPATIYGIPDA 194


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 338  TGNPVGSATSLSSSVTDNVRAQAEANQVTRPQLPPPLL--MSQTKKLPRN 195
            TG+P G        +  N + +AE N   RP+    LL  +  TK L RN
Sbjct: 2455 TGHPDGIIRIWEKRLQSNAKLEAEKNNADRPKWRFHLLRQLQHTKGLGRN 2504


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = -3

Query: 463 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 284
           P A  S  P  PPS+ + +  AP L   A + PP   PAG        LPPA  PA P  
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479

Query: 283 CAP 275
            AP
Sbjct: 480 PAP 482



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -3

Query: 367 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI 260
           PP   P+ G +P  L     +  PPA  PA+P   AP L P+
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -2

Query: 488 SATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSWIQ---TGNPVGS 318
           S +  ++ + S   + T   +VG      +   +  G VV   P PSW+    T   VG 
Sbjct: 607 SVSSSLQYSSSYVTETTTSGSVGFTTTIATPVGSTAGTVVVDIPTPSWVTETVTSGSVGF 666

Query: 317 ATSLSSSV 294
            T++++ V
Sbjct: 667 TTTIATPV 674


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 455 CSW*LLPQRWQKPPTGLQVSTCSHSRAYELYASTVRH 565
           CS+  LP  W +PP  LQ+S  + S    L    +RH
Sbjct: 125 CSF-TLPATWSEPP--LQISLSTSSNGCRLAQRLLRH 158


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 140 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIG 247
           VLPT   T  S    VS SSL++F    ST     G
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTG 279


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 293 TDNVRAQAEANQVTRPQLPPPLLMSQTKKLPRNCPTL 183
           T NV A +   + T    PPP+  S T   P + P+L
Sbjct: 403 TSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSL 439


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -1

Query: 249 TPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVG 106
           TPI++S+        +  +S +  S  GS+     KT    +N+   G
Sbjct: 165 TPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,621
Number of Sequences: 5004
Number of extensions: 60986
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)