Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0576
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.032
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 0.032
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 302 SSVTDNVRAQAEANQVTRPQLPPPLL------MSQTKKLPRNCPTLGTPLTAVLYRPLAR 141
           S++   VR +  ++Q  +P    P +      MS T       P +GTP T ++Y+P   
Sbjct: 804 STILSPVREKLSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLI 863

Query: 140 PRQST 126
           P Q++
Sbjct: 864 PEQTS 868


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 141  TTPVHNNNVAVGDGQQGGAD 82
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 513  LTCNPVGGFCHRWGKSHHEQ 454
            L CN VG     W K   EQ
Sbjct: 1333 LACNAVGDPTREWYKGQGEQ 1352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 141  TTPVHNNNVAVGDGQQGGAD 82
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 513  LTCNPVGGFCHRWGKSHHEQ 454
            L CN VG     W K   EQ
Sbjct: 1329 LACNAVGDPTREWYKGQGEQ 1348


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 523 RAGTNLQPGWGFLPPLG*KSP 461
           R    LQPG  F  PLG + P
Sbjct: 461 RDAVYLQPGMSFGEPLGLRRP 481


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 292 VTLDDRLVADPTGLPVW 342
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 292 VTLDDRLVADPTGLPVW 342
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 498 PGCRLVPALTVEPTNCTPPLFVTI 569
           PG  ++PA T +   C  P    I
Sbjct: 307 PGVTMIPACTCKAVACLDPYVYAI 330


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 45  LEQQRKLRCEHHD 83
           L + R +RC HHD
Sbjct: 142 LTKSRLMRCLHHD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,231
Number of Sequences: 438
Number of extensions: 5178
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)