Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0575
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    52   6e-08
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    50   3e-07
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    30   0.39 
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.8  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   3.7  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   4.8  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.5  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   8.5  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
 Frame = +3

Query: 264 GPMHWGHVSSSNLIDWEHLPTALIPE------TEMCFSGGAVVHGDDLVLLYTG------ 407
           G +HWGH  S +LI WE+ P A+ P+        + FSG AVV   +   L++       
Sbjct: 122 GEVHWGHTVSKDLIHWENYPIAIYPDEHENGVLSLPFSGSAVVDVHNSSGLFSNDTIPEE 181

Query: 408 ---RVTTDTDPFYNETQYLAFSND-GVNFRKYEGNPVL 509
               + TD      E Q +A++ D G  F+KY GNPVL
Sbjct: 182 RIVLIYTDHWTGVAERQAIAYTTDGGYTFKKYSGNPVL 219



 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 494 RKSSPSYVPD-NSADFRDPK-IWKFKDHWYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVL 667
           +K S + V D NS  FRDPK IW F  + +V+I + S   G +  Y S DL +W  LSV 
Sbjct: 211 KKYSGNPVLDINSLQFRDPKVIWDFDANRWVMIVAMSQNYG-IAFYSSYDLIHWTELSVF 269

Query: 668 GESDGDMGYMWECPDL 715
             S G +G  +ECP +
Sbjct: 270 STS-GYLGLQYECPGM 284



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 136 NPRYRPHYHISPPVGWMNDPNGFSYYKEKFHLFYQFYP 249
           N   RP  H +P  G+MNDPNG  Y    +H+F+Q+ P
Sbjct: 79  NATDRPKIHFTPSSGFMNDPNGLVYTGGVYHMFFQYSP 116


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
 Frame = +3

Query: 264 GPMHWGHVSSSNLIDWEHLPTALIPETE--MCFSGGAVVHGDDLVLLYT----GRVTTD- 422
           G  HWGH  S NL  W+ LPTAL P  +  + FSG AV+   +    +      R + D 
Sbjct: 43  GNQHWGHAVSKNLYKWKLLPTALAPGDDHGLMFSGSAVIDKTNSSGFFESGFFSRKSVDP 102

Query: 423 --------TDPFYN-ETQYLAFSND-GVNFRKYEGNPVL 509
                   T  + N ETQ +A+S D G+ F KY+ NP+L
Sbjct: 103 EERIVLIYTTHYDNRETQNIAYSLDGGITFIKYKKNPIL 141



 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 148 RPHYHISPPVGWMNDPNGFSYYKEKFHLFYQFYP 249
           RP  H +PP G+MNDPNG  Y   K+HLF+Q+ P
Sbjct: 4   RPCIHFTPPEGFMNDPNGLVYSNGKWHLFFQWNP 37



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 530 ADFRDPKI-WKFKDHWYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVLGESDGDMGYMWEC 706
           + FRDPK+ W  +   ++++   + K  +VL Y S +L +W  LS  G S G +GY +EC
Sbjct: 146 SQFRDPKVFWHEESRAWIMVVVLAQKY-KVLFYHSLNLRDWVKLSEFG-SAGVLGYQYEC 203

Query: 707 PDLFEL 724
           PD   L
Sbjct: 204 PDFVRL 209


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 530 LNCRARRKDWISFILAEVNSVVTEG*ILSFVVKRVR 423
           L CR R+K W+S + A+V     E  ILS  V  +R
Sbjct: 487 LKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALR 522


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 297 NLIDWEHLPTALIPETEMCFSGGAVVHGD 383
           N++    + T L+  T++C SGG  +HG+
Sbjct: 3   NIVVLGSMNTDLVMRTKICPSGGETIHGE 31


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +2

Query: 524 NSADFRDPKIWKFKDHWYVVIGSSSNKRGRVLLYRSGD----LFNWEFLSVLGESDGDMG 691
           N +DF +  +W  K H   V     +K GR++   S D    L++     V+G   G   
Sbjct: 449 NKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRR 508

Query: 692 YMWEC 706
            +W C
Sbjct: 509 GVWAC 513


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 321  PTALIPETEMCFSGGAVVHGDDLVLLYTGRVTTDTDPFYNETQY 452
            P  L+PE      G  +V  DD+ LL    ++ +T P ++ + +
Sbjct: 1166 PDHLVPEPSRPHCGNGLVFYDDIPLLEVNPISGETIPKFDASSF 1209


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 426 DPFYNETQYLAFSNDGVNFRKY 491
           DPFY ET++  F + GV  + Y
Sbjct: 269 DPFYKETRFDNFGDLGVKIKDY 290


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 TTRKNSTSSISFTLTKRLGSDALGSRF 289
           TTR+NSTS++S   T    S  +GS +
Sbjct: 138 TTRRNSTSNLSSVSTNSDKSRTIGSNY 164


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 379 EMTWYCYTRAASLLTRTRFTTKLNI*PSVTTELTSASMKEI 501
           E +W     +   LTR   T  + I PS+  +++S  +K++
Sbjct: 344 EYSWNTSVLSDEALTRNSLTLPVPIKPSINKDISSIEVKDL 384


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 542 DPKIWKFKDHWYVVIGSS 595
           DPK WK +DH Y V+G S
Sbjct: 89  DPKEWKQQDH-YAVLGLS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,909
Number of Sequences: 5004
Number of extensions: 63184
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)