Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0575
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025) 31 0.97
SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_49152| Best HMM Match : Extensin_2 (HMM E-Value=2.4) 30 2.2
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3) 29 3.9
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_11100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/98 (21%), Positives = 47/98 (47%)
Frame = +3
Query: 279 GHVSSSNLIDWEHLPTALIPETEMCFSGGAVVHGDDLVLLYTGRVTTDTDPFYNETQYLA 458
G ++++ +D E +P ++ T + G+ D+ ++ + D DP++N++ Y
Sbjct: 627 GMITTATDLDREQIPQVVL--TVLVHDRGSPPLSDNCSVIVNLTDSNDNDPYFNQSSY-- 682
Query: 459 FSNDGVNFRKYEGNPVLPTCPTIQLISETPRFGNSKII 572
N +E +P P +QL+++ P G + +I
Sbjct: 683 ------NASLFENSP--SGSPVVQLLAQDPDIGENSLI 712
>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
Length = 1122
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 321 GGVPSRSGCYWKRDPSASD--PKRFVRVKLIEEVEFFLVV*KAVRVIH 184
G + GCYW D D PK + + +EVE L + +A ++H
Sbjct: 235 GAAVGQFGCYWADDALKVDFNPKNSTVIVVTDEVEILLNILRATSLVH 282
>SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 144 PWIDFCLFIRDVFFKFSLSGLILLA 70
P+I FC F+ VF SLSGL+L+A
Sbjct: 62 PYIVFCKFLWQVFQSASLSGLVLVA 86
>SB_49152| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
Length = 360
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 264 GPMHWGHVSSSNLIDWEHLPTALIPETEMCFSGGAVVHGD-DLVLLYTGRVTTDTDP 431
G M+ +++L+ +H+ TA+ P T + +SG + + LLY+G + T +P
Sbjct: 63 GHMYTAANPNTSLLYSDHMYTAVNPNTSLLYSGHMYTAANPNTTLLYSGHMYTAVNP 119
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 264 GPMHWGHVSSSNLIDWEHLPTALIPETEMCFSGGA-VVHGDDLVLLYTGRVTTDTDP 431
G M+ ++ L+ H+ TA+ P T + +SG + LLY+G + T DP
Sbjct: 159 GHMYTAVHPNTTLLCSGHMYTAVHPNTSLLYSGHMYTAVNPNTTLLYSGHMYTAVDP 215
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 264 GPMHWGHVSSSNLIDWEHLPTALIPETEMCFSGGAVVHGD-DLVLLYTGRVTTDTDP 431
G M+ ++ L+ H+ TA+ P T + +SG + + LLY+G + T +P
Sbjct: 95 GHMYTAANPNTTLLYSGHMYTAVNPNTSLLYSGHMYTAANPNTTLLYSGHMYTAVNP 151
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 59 DKLSASKMRPLSENLKNTSRIKRQKSIHGTARTITSLRPSAG*MTLTAFHTTRKNSTSS 235
D + ++PLS N++N+ ++ + S + RPS+G ++ TTR++ SS
Sbjct: 785 DSIDNLDLKPLSLNVQNSDALEAKYSCKKNSAYRDLQRPSSGLKRSSSLRTTRQHRDSS 843
>SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)
Length = 314
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 522 TIQLISETPRFGNSKIIGMLSLAAQAINGEE 614
T Q++S T R G +I LSLAA GEE
Sbjct: 20 TFQVVSNTVRCGEPSLIRPLSLAASHCMGEE 50
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 444 TQYLAFSNDGVNFRKYEGN 500
T YL FSNDG+N+ Y N
Sbjct: 1133 TFYLRFSNDGLNYNPYGAN 1151
>SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 316 TSLRLSSLKPKCASRAAPSSTEMTWY 393
T+L+ SL C SRA PSS + T+Y
Sbjct: 97 TALQGKSLALSCESRAKPSSCDFTFY 122
>SB_11100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 615 CSFTDQGICLIGSFCRSWENQTATWATCGNV 707
C ++ + S S+E +T WATCG V
Sbjct: 60 CHISNISVSWKNSRISSYEQETIAWATCGEV 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,724,321
Number of Sequences: 59808
Number of extensions: 501012
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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