Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0575
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.98 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 148 RPHYHISPPVGWMNDPNGFSYYKEKFHLFYQFYPYEAFGVRCTG 279
           +PH + +P V    DP+ F   K     +Y F P+ A    C G
Sbjct: 450 QPHIYPNPDVF---DPDNFLPEKTANRHYYAFVPFSAGPRSCVG 490


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 226 GIFPCSMKSR*GHSSSRRAE 167
           G++ CS +++ GHS+ R  +
Sbjct: 585 GVYTCSARNKQGHSARRSGD 604


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 226 GIFPCSMKSR*GHSSSRRAE 167
           G++ CS +++ GHS+ R  +
Sbjct: 585 GVYTCSARNKQGHSARRSGD 604


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 88  TKRELEEYIADKKAEINPRYR 150
           +K  L+ ++ADK AE    YR
Sbjct: 17  SKASLKRHVADKHAERQEEYR 37


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 399 YTGRVTTDTDPFYNETQY 452
           Y  + +T+T P YN+  Y
Sbjct: 530 YDSKSSTETPPSYNQLNY 547


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 ARTITSLRPSAG*MTLTAFHTTRKNSTSSISFT 247
           A TIT++  +    T T   TT  N+T + S T
Sbjct: 655 ATTITTITTTTTTTTTTTTTTTTPNTTQNASAT 687


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 560 FKDHWYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVL 667
           FKD   ++IG++ N+    +LY   D+F  +  S L
Sbjct: 369 FKDT-EILIGNNENEGTYFILYDFNDIFEKDQASFL 403


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 560 FKDHWYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVL 667
           FKD   ++IG++ N+    +LY   D+F  +  S L
Sbjct: 369 FKDT-EILIGNNENEGTYFILYDFNDIFEKDQASFL 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,816
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)