Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0574
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.4  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   2.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   2.5  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   7.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.7  
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    25   7.7  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 169 P*GIHTTAPTEVPLSSSTDGTTMATPR 249
           P  + TT PT VP SSST  +   TP+
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQ 427


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 179 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 45
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 179 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 45
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 321 LLIQTTILPPLASRMSVAPSATFWFGSSTML 413
           L +QT  +PP+    S+ PS      SS+++
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLM 686


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 365 VGRALGNFLVWLINNAGGNW 424
           V +ALG+   WL++N   NW
Sbjct: 173 VVQALGHLSRWLVHNKSENW 192


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 82  PEAAPIISTGFSPDRTKTIARCL*TATS-TP*GIHTT--APTEVPLSSSTDGTT 234
           P  A   STG S     + +    T+TS  P G  TT   PT  P SSST  TT
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT 424


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 93  RRFWSPVIHSRWVHAGPLAAE-HLH 22
           RR W P  HS+W+++  L  + HL+
Sbjct: 52  RRVWIPNGHSKWLYSNVLEEKFHLY 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,205
Number of Sequences: 5004
Number of extensions: 40002
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)