Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0574
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 2.5
04_04_0977 + 29851086-29851463,29852054-29852551,29853665-298537... 29 2.5
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 3.3
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 28 3.3
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 28 4.4
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631... 28 4.4
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 27 5.8
08_02_0159 + 13403198-13403581 27 7.6
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123... 27 7.6
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 411 ALLMSQTKKL-PRARPTSGTPAAAVL*FELASLCQSTTMT 295
+L+ S T+ L P+A PTS AA V +L SLC T
Sbjct: 527 SLISSNTENLSPQALPTSSESAAGVTIDDLRSLCSQEFFT 566
>04_04_0977 +
29851086-29851463,29852054-29852551,29853665-29853754,
29854369-29854491
Length = 362
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 312 GTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGTK 431
G D+LI T A+ +V P A+F FG++ A GT+
Sbjct: 10 GGDVLIYDTFNASAAAAAAVVPPASFLFGNNNAGGAAGTE 49
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 ITGLQKRRQ*SVLAFHQTEPKQSPGAC 151
+TG +KR+ +V F Q +P Q G C
Sbjct: 384 VTGAKKRKSGNVRRFEQNKPTQGQGEC 410
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 320 LANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGAHV 466
+ N T + V D + +F+ + GG+ NQ++L+G S GAH+
Sbjct: 225 IGNFPQGTISDMVSDASDGI-SFVCETVGAYGGDPNQIYLMGQSAGAHI 272
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +2
Query: 173 EEFTLPRQPRYRCHRPRMEQQWQHPDEPL---IRSXF---LAVQDVNVIVVDWH 316
+++ L R+ R + +RP+M++ ++ DEP IR + + Q N+ DW+
Sbjct: 143 DKYLLKRELRLQKNRPKMKRYFERVDEPFRLKIRELWHKEMREQRKNIFFFDWY 196
>01_05_0222 +
19462487-19462663,19462916-19462991,19463106-19463185,
19463293-19463342,19463436-19463520,19463640-19463738,
19464110-19464346
Length = 267
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 362 DVGRALGNFLVWLINNAGGNWNQVHL 439
D+G G FL+WL N+G N + L
Sbjct: 81 DIGCGSGRFLIWLAKNSGERRNYLGL 106
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 275 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 454
LA + + V +D+ N T V D + + +++ I + GG+ N+++L+G S
Sbjct: 170 LAERGIIVACIDYR---NFPQGTIGDMVSDASQGI-SYVCNNIASYGGDPNRIYLVGQSA 225
Query: 455 GAHV 466
GAH+
Sbjct: 226 GAHI 229
>08_02_0159 + 13403198-13403581
Length = 127
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 399 SQTKKLPRARPTSGTPAAAVL 337
S + + PRARPTSG+P A++
Sbjct: 61 SSSARQPRARPTSGSPNHALV 81
>05_03_0297 -
11911699-11911772,11911987-11912072,11912245-11912332,
11912592-11912719,11913540-11913961,11931803-11932423
Length = 472
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 420 LPPALLMSQTKKLPRARPTSGTPAAAVL*FELASLCQSTTMTFT 289
LP A +S + A+ T+ P A +L +LASLC+STT T
Sbjct: 367 LPKANKISHETLMGCAKYTTMQPQA-ILIVKLASLCRSTTFLHT 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,808
Number of Sequences: 37544
Number of extensions: 305109
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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