Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0574
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15860.2 68418.m01856 expressed protein                             30   0.69 
At5g15860.1 68418.m01855 expressed protein                             30   0.69 
At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    30   0.69 
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    29   2.1  
At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    27   4.8  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    27   6.4  
At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6) iden...    27   6.4  
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    27   8.5  
At1g25550.1 68414.m03172 myb family transcription factor contain...    27   8.5  
At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ...    27   8.5  

>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +2

Query: 275 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 454
           LA +D+ V  +D+    N    T +  V D  + + +F+   I+  GG+ N+++L+G S 
Sbjct: 181 LAERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSA 236

Query: 455 GAHV 466
           GAH+
Sbjct: 237 GAHI 240


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +2

Query: 275 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 454
           LA +D+ V  +D+    N    T +  V D  + + +F+   I+  GG+ N+++L+G S 
Sbjct: 181 LAERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSA 236

Query: 455 GAHV 466
           GAH+
Sbjct: 237 GAHI 240


>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +2

Query: 275 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 454
           LA +D+ V  +D+    N    T +  V D  + + +F+   I+  GG+ N+++L+G S 
Sbjct: 176 LAERDIIVACLDYR---NFPQGTISDMVSDAAQGI-SFVCNNISAFGGDPNRIYLMGQSA 231

Query: 455 GAHV 466
           GAH+
Sbjct: 232 GAHI 235


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 125 EPKQSPGACERQHQLREEFTLPRQPRYRCHRPRMEQQWQHPDEP 256
           +PK  P +  +Q   ++E   P QP+ +   P+ E   Q P +P
Sbjct: 477 QPKPKPES-PKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKP 519


>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 144 VLVNGNINSVR--NSHYRANRGTVVIVHGWNN 233
           V V+ N+ +VR    HY  NR  VV  HGWN+
Sbjct: 342 VYVSSNVMNVRYIKFHYY-NRAVVVRQHGWNS 372


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 252 NLSSDPXSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSAT 386
           +L  +  S+P     SS +T T +   +++  P +S++++AP+ T
Sbjct: 263 SLMEEMASIPASKLFSSPITSTPVKTTSSLAKPTSSQINIAPTPT 307


>At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6)
           identical to SKP1 interacting partner 6 GI:10716957 from
           [Arabidopsis thaliana]
          Length = 372

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 304 NDDIHVLNGKEXGSDERFIWVLPLLFHPWTMTTVPRLAR 188
           + +I+V+ G         +WVL   FH W   +  R+ R
Sbjct: 125 DSEIYVIGGSIRDVPSSSVWVLDCRFHTWRRVSNMRVGR 163


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 166 LMLPFTSTWRLFWFCLV 116
           + L F S WR  WFCLV
Sbjct: 861 VFLCFDSPWRRAWFCLV 877


>At1g25550.1 68414.m03172 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 93  RRFWSPVIHSRWVHA 49
           RR WSP +H R++HA
Sbjct: 211 RRCWSPELHRRFLHA 225


>At1g08280.1 68414.m00914 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 398

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 156 GNINSVRNSHYRANRGTVVIVHGWNNNGNTQMNLSSDPXSLPF 284
           G +NS ++ HY  N+   + +H +        +L + P ++PF
Sbjct: 343 GKLNSTKH-HYHTNQKAELKLHDYEAEYRLYRDLENSPRAIPF 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,017,706
Number of Sequences: 28952
Number of extensions: 221938
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)