Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0573
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   127   5e-31
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   124   5e-30
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.35 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   3.2  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.2  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   4.3  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   7.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   9.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.8  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   9.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  127 bits (307), Expect = 5e-31
 Identities = 55/78 (70%), Positives = 66/78 (84%)
 Frame = +1

Query: 22  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 202 MFQLPKLYAKLHYCVSCA 255
            + +PKLY KL YCVSCA
Sbjct: 61  EYTIPKLYIKLQYCVSCA 78



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +3

Query: 255 IHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 362
           IHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 79  IHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  124 bits (299), Expect = 5e-30
 Identities = 54/83 (65%), Positives = 68/83 (81%)
 Frame = +1

Query: 22  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 202 MFQLPKLYAKLHYCVSCASTAKL 270
            + +PK+Y KL YCVSCA  A++
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARV 83



 Score = 35.5 bits (78), Expect = 0.003
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +3

Query: 255 IHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 362
           IH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 103 RCVPKDKAIKKFVIRNIVEAAAVRDI 180
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 162 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 43
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 268 LSGTDRRKTEESVLLPRVTSLGT 336
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 109 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSCASTAKLSGTD 282
           +PKDKA++    RN  +  A   I DA +    +  + +  +K     S     KL+   
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226

Query: 283 RRKTEESVLLPRVTSLGTCHVHRQCKGSDLLLN 381
           +   ++   +P  T +    ++RQ   SD+  N
Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSDMKRN 258


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 249 MRIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 344
           MR    + +        IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 394 YFIIYLIINHFLCTACGRDMS 332
           Y  ++ +++H+L   CG+D+S
Sbjct: 165 YGHLHCVLDHYLIIFCGQDLS 185


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 192
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -1

Query: 78  FNVTTSMLGASSITAL---TSHVSN 13
           FN+ TS   +SS+T+    +SH+SN
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISN 124


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 16  RNMTRKRRNGGRAKHG 63
           R   R RR  GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,546
Number of Sequences: 5004
Number of extensions: 25576
Number of successful extensions: 62
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)