Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0573
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   132   1e-31
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   1.2  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.2  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    28   2.1  
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   4.9  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   4.9  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    27   6.4  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    27   6.4  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    27   6.4  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    27   6.4  
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    26   8.5  
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    26   8.5  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  132 bits (318), Expect = 1e-31
 Identities = 59/83 (71%), Positives = 66/83 (79%)
 Frame = +1

Query: 22  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 202 MFQLPKLYAKLHYCVSCASTAKL 270
            + LPKLY KLHYC++CA  +K+
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKV 83



 Score = 34.7 bits (76), Expect = 0.024
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 255 IHSKVVRNRSKKDRRIRTPP 314
           IHSKVVRNRS++ RR R PP
Sbjct: 79  IHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 70  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 240
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 241 C 243
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 70  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 240
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 241 C 243
           C
Sbjct: 258 C 258


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 135 LFDGLVLWHAPRAVCASHGFNVTTSMLGASSITALTSHVSN 13
           L DGLV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 114
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 114
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 205 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 348
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 205 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 348
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 205 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 348
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 205 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 348
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 251 AHPQQSCQEQIEERQKNPYSSQ 316
           AHP+     QIE ++ NPYS +
Sbjct: 29  AHPEWMSSRQIERQRWNPYSME 50


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 251 AHPQQSCQEQIEERQKNPYSSQ 316
           AHP+     QIE ++ NPYS +
Sbjct: 29  AHPEWMSSRQIERQRWNPYSME 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,785
Number of Sequences: 27780
Number of extensions: 152298
Number of successful extensions: 455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)