Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0573
(396 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 130 2e-31
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 128 1e-30
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 128 1e-30
At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger) fa... 27 3.4
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 4.5
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim... 26 7.9
At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 26 7.9
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 130 bits (315), Expect = 2e-31
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +1
Query: 22 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 202 MFQLPKLYAKLHYCVSCA 255
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 35.1 bits (77), Expect = 0.017
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 255 IHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 359
IHS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 128 bits (310), Expect = 1e-30
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = +1
Query: 22 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 202 MFQLPKLYAKLHYCVSCA 255
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 33.9 bits (74), Expect = 0.039
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 255 IHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 359
IHS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 128 bits (310), Expect = 1e-30
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = +1
Query: 22 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 201
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 202 MFQLPKLYAKLHYCVSCA 255
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 33.9 bits (74), Expect = 0.039
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 255 IHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 359
IHS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113
>At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 191
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 70 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVS 249
H+++ C P D+ K R+ + +D+S+Y + + KL + V+
Sbjct: 90 HIESRLLEGCVPRCPHDQCEYKLTFRSCANLLTPKTKSDSSIYLLLKTLKLGDVVSNAVN 149
Query: 250 -CASTAKLSG 276
ASTAK G
Sbjct: 150 PFASTAKFHG 159
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 79 AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 222
++ C C VP+ +K + AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613
>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 587
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 62 DVVTLKP*DAQTARGACQRTRPSKS 136
DVVTL A+T RG C RP KS
Sbjct: 204 DVVTLADRLAETYRGFCIPPRPDKS 228
>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 917
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 82 VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAS 258
V C N + + F +++ ++AAA R I V + Q K++ L+ C + S
Sbjct: 90 VLCINKLKLTISENEEDGFYLKSWIDAAAKRKIQHLDVQFLPQFHKIHFNLYKCEALVS 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,960,536
Number of Sequences: 28952
Number of extensions: 144450
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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